Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pectin lyase fold

Term: IPR012334  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene79274 SustainPine v3.0 341
AutoFact: pectate lyase B [Fragaria x ananassa] gb|AAZ31565.1| pectate lyase isoform 3 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectate lyase 0.0
Internal
sp_v3.0_unigene79326 SustainPine v3.0 342
AutoFact: Pectate lyase 8 n=4 Tax=Zea mays RepID=B6SSS1_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectate lyase 0.0
Internal
sp_v3.0_unigene79377 SustainPine v3.0 304
AutoFact: Pectinesterase n=1 Tax=Sorghum bicolor RepID=C5YIK0_SORBI 2.0e-16
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 5.199e-12
Internal
sp_v3.0_unigene79745 SustainPine v3.0 396
AutoFact: pectate lyase [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectate lyase 0.0
Internal
sp_v3.0_unigene79900 SustainPine v3.0 185
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RDW4_RICCO 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80529 SustainPine v3.0 195
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=D5AB84_PICSI 2.0e-24
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr4 scaffold_73, whole genome shotgun sequence 4.567e-08
Internal
sp_v3.0_unigene80535 SustainPine v3.0 99
AutoFact: Pectinesterase (Fragment) n=1 Tax=Medicago truncatula RepID=Q6PQ97_MEDTR 1.0e-05
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80918 SustainPine v3.0 289
AutoFact: Unassigned protein 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene80988 SustainPine v3.0 340
AutoFact: Pectinesterase (Fragment) n=1 Tax=Musa acuminata AAA Group RepID=C4N552_MUSAC 0.0
FL-Next: sp=Pectinesterase; Taiwania cryptomerioides. 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene81496 SustainPine v3.0 176
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI 7.0e-23
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene81509 SustainPine v3.0 107
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI 9.0e-10
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 3.724e-23
Internal
sp_v3.0_unigene81701 SustainPine v3.0 306
AutoFact: Pectinesterase n=1 Tax=Fragaria x ananassa RepID=Q7X9B1_FRAAN 4.0e-37
FL-Next: sp=Pectinesterase; Taiwania cryptomerioides. 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene93622 SustainPine v3.0 1561
AutoFact: Pectinesterase n=1 Tax=Vitis vinifera RepID=A5BYJ7_VITVI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
Complete
sp_v3.0_unigene93843 SustainPine v3.0 1909
AutoFact: Pectate lyase n=1 Tax=Dianthus caryophyllus RepID=D4QD73_DIACA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene94599 SustainPine v3.0 933
AutoFact: Pectinesterase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9STS3_PHYPA 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene95255 SustainPine v3.0 635
AutoFact: Pectate lyase (Fragment) n=1 Tax=Glycine max RepID=A4GU25_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectate lyase 0.0
C-terminus
sp_v3.0_unigene95782 SustainPine v3.0 331
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9S0A6_RICCO 8.0e-22
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 1.483e-25
Internal
sp_v3.0_unigene96237 SustainPine v3.0 654
AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.953e-18
Internal
sp_v3.0_unigene96423 SustainPine v3.0 444
AutoFact: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SLE0_RICCO 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine Rich Repeat family protein, expressed 6.104e-17
N-terminus
sp_v3.0_unigene96673 SustainPine v3.0 661
AutoFact: putative protein kinase Xa21 [Oryza sativa Japonica Group] 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine Rich Repeat, putative 5.953e-23
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain