Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Parallel beta-helix repeat

Term: IPR006626  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene52287 SustainPine v3.0 457
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RI03_RICCO 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene52645 SustainPine v3.0 218
• AutoFact: Unassigned protein
• FL-Next: sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52806 SustainPine v3.0 425
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SS70_RICCO 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 4.501e-24
Internal
sp_v3.0_unigene53026 SustainPine v3.0 470
• AutoFact: Putative gag-pol polyprotein n=1 Tax=Fragaria x ananassa RepID=C6GFP7_FRAAN 6.0e-35
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.153e-16
Internal
sp_v3.0_unigene53334 SustainPine v3.0 446
• AutoFact: putative polygalacturonase / pectinase [Arabidopsis thaliana] emb|CAA66811.1| polygalacturonase-like protein [Arabidopsis thaliana] dbj|BAB01843.1| polygalacturonase [Arabidopsis thaliana] dbj|BAC42276.1| putative polygalacturonase [Arabidopsis thaliana] 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene53935 SustainPine v3.0 94
• AutoFact: Putative polygalacturonase n=2 Tax=Oryza sativa RepID=Q5VS63_ORYSJ 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycoside hydrolase, family 28 6.102e-11
Internal
sp_v3.0_unigene55162 SustainPine v3.0 456
• AutoFact: Pentatricopeptide repeat domain containing protein, putative [Solanum demissum] 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.117e-06
Internal
sp_v3.0_unigene55540 SustainPine v3.0 318
• AutoFact: pfam00665, rve, Integrase core domain 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.377e-08
Internal
sp_v3.0_unigene56824 SustainPine v3.0 243
• AutoFact: Unassigned protein 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene56860 SustainPine v3.0 318
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; Flags: Precursor dbj|BAB01925.1| selenium-binding protein-like [Arabido 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene57173 SustainPine v3.0 425
• AutoFact: putative pectate lyase 18 [Arabidopsis thaliana] ref|NP_001190827.1| putative pectate lyase 18 [Arabidopsis thaliana] sp|Q9C5M8.2|PEL18_ARATH RecName: Full=Probable pectate lyase 18; AltName: Full=Pectate lyase A10; Flags: Precursor gb|AAW38990.1| At4g247 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 0.0
Putative C-terminus
sp_v3.0_unigene57972 SustainPine v3.0 525
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.177e-29
Internal
sp_v3.0_unigene59335 SustainPine v3.0 322
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g09950 dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana] gb|AED91470.1| pen 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene59367 SustainPine v3.0 293
• AutoFact: rve domain containing protein 8.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transposon protein, putative, unclassified 1.359e-08
Internal
sp_v3.0_unigene59932 SustainPine v3.0 391
• AutoFact: pfam00665, rve, Integrase core domain 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene60100 SustainPine v3.0 288
• AutoFact: Pectate lyase, putative n=1 Tax=Ricinus communis RepID=B9RWM7_RICCO 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 2.11596e-43
Internal
sp_v3.0_unigene60737 SustainPine v3.0 347
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; Flags: Precursor dbj|BAB01925.1| selenium-binding protein-like [Arabido 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene60924 SustainPine v3.0 109
• AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] emb|CAA23048.1| putative polygalacturonase [Arabidopsis thaliana] emb|CAB81300.1| putative polygalacturonase [Arabidopsis thaliana] gb|AAL32775.1| 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polygalacturonase, putative 4.452e-13
Internal
sp_v3.0_unigene61465 SustainPine v3.0 100
• AutoFact: pectate lyase-like protein [Arabidopsis thaliana] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene61554 SustainPine v3.0 234
• AutoFact: Glyco_hydro_28 domain containing protein 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polygalacturonase 1.67e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain