Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, LIM-type

Term: IPR001781  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2156 SustainPine v3.0 2472
AutoFact: similar to zinc ion binding 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Emb|CAB16816.1 8.611e-16
Complete
sp_v3.0_unigene2160 SustainPine v3.0 1324
AutoFact: putative pollen specific LIM domain-containing protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7171 SustainPine v3.0 2392
AutoFact: LIM domain containing protein-like n=4 Tax=Oryza sativa RepID=Q5SMM0_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7975 SustainPine v3.0 1086
AutoFact: Unassigned protein
FL-Next: sp=BTB/POZ domain-containing protein At1g63850; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein binding protein, putative 7.257e-08
C-terminus
sp_v3.0_unigene10071 SustainPine v3.0 1418
AutoFact: metallophosphoesterase [Nostoc punctiforme PCC 73102] gb|ACC84721.1| metallophosphoesterase [Nostoc punctiforme PCC 73102] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene11734 SustainPine v3.0 1501
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 0.0
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene14893 SustainPine v3.0 1544
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein binding protein, putative 7.038e-08
Putative Complete
sp_v3.0_unigene23382 SustainPine v3.0 733
AutoFact: LIM-type zinc finger-containing protein n=1 Tax=Dictyostelium fasciculatum RepID=F4Q264_9MYCE 1.0e-13
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Sma3: LIM-domain SF3 protein 4.386e-06
Putative Complete
sp_v3.0_unigene29486 SustainPine v3.0 1453
AutoFact: LIM domain protein WLIM-1 [Helianthus annuus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene34771 SustainPine v3.0 464
AutoFact: similar to zinc ion binding 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LIM domain-containing protein, putative, expressed 4.665e-12
C-terminus
sp_v3.0_unigene43198 SustainPine v3.0 124
AutoFact: DNA pol lambda n=3 Tax=Arabidopsis RepID=Q9FNY4_ARATH 3.0e-09
FL-Next: tr=DNA pol lambda; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA polymerase lambda 1.607e-09
Internal
sp_v3.0_unigene70750 SustainPine v3.0 440
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 8.0e-17
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Putative C-terminus
sp_v3.0_unigene80276 SustainPine v3.0 153
AutoFact: DNA polymerase lambda [Oryza sativa Japonica Group] 1.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene80484 SustainPine v3.0 139
AutoFact: DNA polymerase lambda subunit [Arabidopsis thaliana] emb|CAC21394.1| DNA polymerase lambda [Arabidopsis thaliana] gb|ABE65612.1| DNA polymerase lambda [Arabidopsis thaliana] gb|ADM33939.1| DNA pol lambda [Arabidopsis thaliana] gb|AEE28588.1| DNA polymeras 3.0e-12
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Sma3: DNA polymerase lambda 2.116e-09
Internal
sp_v3.0_unigene97395 SustainPine v3.0 731
AutoFact: LIM domain protein WLIM-1 [Helianthus annuus] 5.99994e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pollen-specific protein SF3, putative 2.757e-22
Complete
sp_v3.0_unigene107982 SustainPine v3.0 489
AutoFact: snRNA-activating protein complex subunit, putative n=1 Tax=Ricinus communis RepID=B9SGW6_RICCO 0.0
FL-Next: tr=snRNA-activating protein complex subunit, putative; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene130691 SustainPine v3.0 488
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene142278 SustainPine v3.0 1050
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 0.0
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene144594 SustainPine v3.0 657
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 3.0e-23
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Sma3: Pollen-specific protein SF3, putative 2.573e-22
N-terminus
sp_v3.0_unigene148225 SustainPine v3.0 380
AutoFact: Unassigned protein
FL-Next: sp=SCAR-like protein 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain