Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid binding, OB-fold, tRNA/helicase-type

Term: IPR004365  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene153240 SustainPine v3.0 381
AutoFact: Asparaginyl-tRNA synthetase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAU7_9CLOT 2.0e-39
FL-Next: sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Asparaginyl-tRNA synthetase, cytoplasmic 3 1.937e-07
Internal
sp_v3.0_unigene154182 SustainPine v3.0 377
AutoFact: OJ1717_A09.34 gene product (ISS) [Ostreococcus tauri] emb|CAL55879.1| OJ1717_A09.34 gene product (ISS) [Ostreococcus tauri] 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative aspartate-tRNA ligase 8.702e-08
Internal
sp_v3.0_unigene154340 SustainPine v3.0 456
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] sp|O49453.1|Y4844_ARATH RecName: Full=Uncharacterized protein At4g28440 emb|CAA16883.1| putative protein [Arabidopsis thaliana] emb|CAB79646.1| putative protein [Arabidopsis tha 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OB-fold nucleic acid binding domain containing protein 4.574e-15
Putative Complete
sp_v3.0_unigene154957 SustainPine v3.0 496
AutoFact: dihydrolipoamide S-succinyltransferase (ISS) [Ostreococcus tauri] emb|CAL53698.1| dihydrolipoamide S-succinyltransferase (ISS) [Ostreococcus tauri] 9.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene155160 SustainPine v3.0 442
AutoFact: Dihydrolipoyl dehydrogenase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQY3_9RICK 0.0
FL-Next: sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dihydrolipoyl dehydrogenase 0.0
Putative C-terminus
sp_v3.0_unigene155176 SustainPine v3.0 432
AutoFact: Asparaginyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus RepID=D7FLN1_ECTSI 8.0e-35
FL-Next: sp=Asparagine--tRNA ligase, cytoplasmic 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Asparaginyl-tRNA synthetase, cytoplasmic 3 1.915e-07
Internal
sp_v3.0_unigene155801 SustainPine v3.0 539
AutoFact: Dihydrolipoyl dehydrogenase n=1 Tax=Polysphondylium pallidum RepID=D3BDF9_POLPA 0.0
FL-Next: sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dihydrolipoyl dehydrogenase 0.0
Internal
sp_v3.0_unigene156176 SustainPine v3.0 414
AutoFact: Aspartate-trna ligase n=1 Tax=Thalassiosira pseudonana RepID=B8BRC4_THAPS 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative aspartate-tRNA ligase 9.31e-08
C-terminus
sp_v3.0_unigene157418 SustainPine v3.0 317
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Tribolium castaneum RepID=D6WMI1_TRICA 1.0e-36
FL-Next: sp=Lysine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Lysyl-tRNA synthetase 0.0
Putative C-terminus
sp_v3.0_unigene159148 SustainPine v3.0 414
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=A2Q1N3_MEDTR 5.0e-39
FL-Next: sp=Lysine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Lysyl-tRNA synthetase 5.60519e-45
Internal
sp_v3.0_unigene159216 SustainPine v3.0 362
AutoFact: aspartyl-tRNA synthetase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB108 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Aspartyl-tRNA synthetase 1.382e-07
Internal
sp_v3.0_unigene161858 SustainPine v3.0 328
AutoFact: replication factor A1 [Arabidopsis thaliana] gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana] dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana] gb|AAO64881.1| At2g06510 [Arabidopsis thaliana] gb|AEC06010.1| replic 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene163650 SustainPine v3.0 435
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OB-fold nucleic acid binding domain containing protein 4.674e-15
Putative N-terminus
sp_v3.0_unigene164466 SustainPine v3.0 225
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene165749 SustainPine v3.0 178
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAM15519.1| Expressed protein [Arabidopsis thaliana] gb|AAM64686.1| unknown [Arabidopsis thaliana] gb|AAM96981.1| expressed protein [Arabidopsis thaliana] gb|AAN15742.1| expr 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OB-fold nucleic acid binding domain containing protein 9.104e-12
C-terminus
sp_v3.0_unigene166876 SustainPine v3.0 136
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene168159 SustainPine v3.0 144
AutoFact: asparaginyl-tRNA synthetase, putative [Brassica oleracea] 1.0e-16
FL-Next: sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Asparaginyl-tRNA synthetase, cytoplasmic 3 1.82e-07
Internal
sp_v3.0_unigene183130 SustainPine v3.0 411
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gb|ABJ17144.1| At3g21310 [Arabidopsis thaliana] gb|AEE76491.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thalia 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene191499 SustainPine v3.0 373
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OB-fold nucleic acid binding domain containing protein 3.107e-15
C-terminus
sp_v3.0_unigene194388 SustainPine v3.0 470
AutoFact: OB-fold nucleic acid binding domain containing protein n=2 Tax=Zea mays RepID=B6U0S5_MAIZE 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain