Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid binding, OB-fold, tRNA/helicase-type

Term: IPR004365  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene71151 SustainPine v3.0 179
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene71658 SustainPine v3.0 191
AutoFact: Lysyl-tRNA synthetase n=2 Tax=Arabidopsis RepID=Q9LJE2_ARATH 7.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lysyl-tRNA synthetase 1.563e-10
Putative Complete
sp_v3.0_unigene73522 SustainPine v3.0 416
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene75151 SustainPine v3.0 336
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N7Q5_COPC7 6.0e-38
FL-Next: sp=Lysine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Lysyl-tRNA synthetase 2.788e-16
Internal
sp_v3.0_unigene75397 SustainPine v3.0 313
AutoFact: Dihydrolipoyl dehydrogenase n=2 Tax=Paramecium tetraurelia RepID=A0E455_PARTE 4.0e-31
FL-Next: sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dihydrolipoyl dehydrogenase 0.0
C-terminus
sp_v3.0_unigene80407 SustainPine v3.0 452
AutoFact: Dihydrolipoyl dehydrogenase n=1 Tax=Tuber melanosporum Mel28 RepID=D5GGN7_TUBMM 0.0
FL-Next: sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dihydrolipoyl dehydrogenase 0.0
Internal
sp_v3.0_unigene99198 SustainPine v3.0 557
AutoFact: RPA 70kDa subunit [Pisum sativum] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene99720 SustainPine v3.0 487
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gb|ABF59157.1| hypothetical protein At1g51770 [Arabidopsis thaliana] gb|AEE32713.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene99873 SustainPine v3.0 271
AutoFact: DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana] 6.0e-28
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: DNA polymerase epsilon subunit B-like protein 3.441e-09
Internal
sp_v3.0_unigene100962 SustainPine v3.0 318
AutoFact: putative aspartyl-tRNA synthetase [Oryza sativa Japonica Group] 2.0e-21
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Putative aspartate--tRNA ligase 1.362e-08
C-terminus
sp_v3.0_unigene104400 SustainPine v3.0 331
AutoFact: DNA polymerase epsilon subunit B, putative n=1 Tax=Ricinus communis RepID=B9SYF4_RICCO 2.0e-27
FL-Next: tr=DNA polymerase epsilon subunit B, putative; Ricinus communis (Castor bean). 0.0
Sma3: DNA polymerase epsilon subunit B-like protein 4.503e-09
Internal
sp_v3.0_unigene119939 SustainPine v3.0 402
AutoFact: Aspartyl-tRNA synthetase, cytoplasmic 1 n=1 Tax=Dictyostelium discoideum RepID=SYDC1_DICDI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative aspartate-tRNA ligase 9.413e-08
Internal
sp_v3.0_unigene122607 SustainPine v3.0 241
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gb|AAD32878.1|AC005489_16 F14N23.16 [Arabidopsis thaliana] gb|ABK32109.1| At1g10280 [Arabidopsis thaliana] gb|AEE28561.1| Core-2/I-branching beta-1,6-N-acety 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene126940 SustainPine v3.0 1390
AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative replication factor A 8.543e-09
Complete
sp_v3.0_unigene126974 SustainPine v3.0 1471
AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative replication factor A 1.122e-08
Complete
sp_v3.0_unigene139731 SustainPine v3.0 393
AutoFact: Asparagine--tRNA ligase, putative n=1 Tax=Ricinus communis RepID=B9RKD2_RICCO 7.0e-13
FL-Next: sp=Asparagine--tRNA ligase, cytoplasmic 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene150227 SustainPine v3.0 471
AutoFact: Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative n=1 Tax=Toxoplasma gondii RepID=B9PQP0_TOXGO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 2-oxoglutarate dehydrogenase E2 subunit 1.362e-08
C-terminus
sp_v3.0_unigene150959 SustainPine v3.0 383
AutoFact: Asparaginyl-tRNA synthetase n=1 Tax=Treponema succinifaciens DSM 2489 RepID=F2NW56_9SPIO 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Asparaginyl-trna synthetase 6.735e-08
Putative C-terminus
sp_v3.0_unigene152189 SustainPine v3.0 506
AutoFact: Asparaginyl-tRNA synthetase n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FME6_FLAJ1 0.0
FL-Next: sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Asparaginyl-tRNA synthetase, cytoplasmic 3 1.886e-07
Internal
sp_v3.0_unigene152359 SustainPine v3.0 148
AutoFact: asparaginyl tRNA synthetase [Legionella pneumophila str. Corby] ref|YP_003619574.1| asparaginyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] sp|A5IE87.1|SYN_LEGPC RecName: Full=Asparaginyl-tRNA synthetase; AltName: Full=Asparagine--tRNA ligase; 3.0e-10
FL-Next: sp=Asparagine--tRNA ligase, cytoplasmic 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain