Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, U1-type

Term: IPR003604  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1816 SustainPine v3.0 1055
AutoFact: C2H2-type zinc finger-containing protein [Arabidopsis thaliana] gb|AAK76505.1| unknown protein [Arabidopsis thaliana] gb|AAD31578.2| expressed protein [Arabidopsis thaliana] gb|AAM14308.1| unknown protein [Arabidopsis thaliana] gb|AEC09323.1| C2H2-type zi 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3293 SustainPine v3.0 3405
AutoFact: DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=Q9C911_ARATH 0.0
FL-Next: tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Complete
sp_v3.0_unigene8981 SustainPine v3.0 1513
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene9367 SustainPine v3.0 1874
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene10594 SustainPine v3.0 912
AutoFact: splicing factor 3A subunit 2 [Arabidopsis thaliana] gb|AAK96629.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AAC25942.2| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAM19966.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AEC087 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 6.042e-09
N-terminus
sp_v3.0_unigene10980 SustainPine v3.0 245
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFQ6_RICCO 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Emb|CAB71880.1 1.539e-08
Internal
sp_v3.0_unigene12122 SustainPine v3.0 248
AutoFact: DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=Q9C911_ARATH 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene17939 SustainPine v3.0 1055
AutoFact: U4/U6.U5 tri-snRNP component [Arabidopsis thaliana] gb|AAK62582.1| AT3g05760/F10A16_5 [Arabidopsis thaliana] gb|AAK96449.1| AT3g05760/F10A16_5 [Arabidopsis thaliana] gb|AEE74293.1| U4/U6.U5 tri-snRNP component [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Zinc finger protein, putative 0.0
N-terminus
sp_v3.0_unigene20674 SustainPine v3.0 603
AutoFact: PAT1 multi-domain protein 3.0e-15
coding
sp_v3.0_unigene23497 SustainPine v3.0 1040
AutoFact: C2H2 and C2HC zinc finger protein [Arabidopsis thaliana] gb|AAQ22665.1| At1g49590 [Arabidopsis thaliana] gb|AEE32445.1| C2H2 and C2HC zinc finger protein [Arabidopsis thaliana] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene27367 SustainPine v3.0 723
AutoFact: Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] emb|CAB71880.1| putative protein [Arabidopsis thaliana] gb|AEE80322.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Emb|CAB71880.1 2.723e-12
Putative N-terminus
sp_v3.0_unigene52643 SustainPine v3.0 153
AutoFact: splicing factor 3A subunit 2 [Arabidopsis thaliana] gb|AAK96629.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AAC25942.2| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAM19966.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AEC087 6.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 5.743e-09
Internal
sp_v3.0_unigene60696 SustainPine v3.0 371
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene65367 SustainPine v3.0 184
AutoFact: C2H2 zinc finger protein FZF n=2 Tax=Brassicaceae RepID=Q9ZQ18_ARATH 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative zinc finger protein 2.898e-06
Putative N-terminus
sp_v3.0_unigene69380 SustainPine v3.0 154
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 1.248e-09
Internal
sp_v3.0_unigene71368 SustainPine v3.0 125
AutoFact: Splicing factor 3A subunit putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WD56_9STRA 3.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 3.335e-09
Internal
sp_v3.0_unigene73775 SustainPine v3.0 374
AutoFact: splicing factor 3a [Coprinopsis cinerea okayama7#130] gb|EAU92722.1| splicing factor 3a [Coprinopsis cinerea okayama7#130] 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 5.891e-09
N-terminus
sp_v3.0_unigene94193 SustainPine v3.0 1928
AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein A1, putative 2.595e-11
Complete
sp_v3.0_unigene94205 SustainPine v3.0 537
AutoFact: DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=Q9C911_ARATH 6.0e-40
FL-Next: tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Complete
sp_v3.0_unigene95429 SustainPine v3.0 321
AutoFact: YL1 multi-domain protein 4.0e-07
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain