Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, U1-type

Term: IPR003604  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene100389 SustainPine v3.0 717
AutoFact: Unassigned protein 8.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene103408 SustainPine v3.0 419
AutoFact: Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] emb|CAB71880.1| putative protein [Arabidopsis thaliana] gb|AEE80322.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Emb|CAB71880.1 2.076e-08
Putative N-terminus
sp_v3.0_unigene148938 SustainPine v3.0 252
AutoFact: C2H2-type zinc finger-containing protein [Arabidopsis thaliana] gb|AAK76505.1| unknown protein [Arabidopsis thaliana] gb|AAD31578.2| expressed protein [Arabidopsis thaliana] gb|AAM14308.1| unknown protein [Arabidopsis thaliana] gb|AEC09323.1| C2H2-type zi 8.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene151548 SustainPine v3.0 134
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene155415 SustainPine v3.0 553
AutoFact: U1 small nuclear ribonucleoprotein C n=1 Tax=Salmo salar RepID=B5XBE7_SALSA 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene157360 SustainPine v3.0 477
AutoFact: U1-type zinc finger-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3BSQ9_POLPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 5.891e-09
Internal
sp_v3.0_unigene158168 SustainPine v3.0 114
AutoFact: splicing factor 3A subunit 2 [Arabidopsis thaliana] gb|AAK96629.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AAC25942.2| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAM19966.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AEC087 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 2.745e-09
Putative N-terminus
sp_v3.0_unigene158242 SustainPine v3.0 419
AutoFact: SPL2p n=3 Tax=Chlamydomonas reinhardtii RepID=A8HYG6_CHLRE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 5.743e-09
N-terminus
sp_v3.0_unigene161906 SustainPine v3.0 357
AutoFact: zf-LYAR domain containing protein 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: RNA-binding protein 5.808e-07
Putative N-terminus
sp_v3.0_unigene167539 SustainPine v3.0 346
AutoFact: U4/U6.U5 tri-snRNP component [Arabidopsis thaliana] gb|AAK62582.1| AT3g05760/F10A16_5 [Arabidopsis thaliana] gb|AAK96449.1| AT3g05760/F10A16_5 [Arabidopsis thaliana] gb|AEE74293.1| U4/U6.U5 tri-snRNP component [Arabidopsis thaliana] 4.0e-19
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Putative N-terminus
sp_v3.0_unigene194746 SustainPine v3.0 420
AutoFact: Unassigned protein 4.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene200173 SustainPine v3.0 394
AutoFact: splicing factor (ISS) [Ostreococcus tauri] emb|CAL57084.1| splicing factor (ISS) [Ostreococcus tauri] 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor 3A subunit 2 5.891e-09
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain