Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ubiquitin-associated/translation elongation factor EF1B, N-terminal

Term: IPR000449  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene74136 SustainPine v3.0 310
AutoFact: Nascent polypeptide-associated complex subunit alpha n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NH82_COPC7 4.0e-24
FL-Next: sp=Nascent polypeptide-associated complex subunit alpha-like protein; Pinus taeda (Loblolly pine). 0.0
C-terminus
sp_v3.0_unigene75788 SustainPine v3.0 471
AutoFact: ubiquitin-protein ligase [Cryptococcus neoformans var. neoformans JEC21] ref|XP_772541.1| hypothetical protein CNBL0210 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL17894.1| hypothetical protein CNBL0210 [Cryptococcus neoformans var. neoformans 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 7.067e-09
Internal
sp_v3.0_unigene76550 SustainPine v3.0 229
AutoFact: uv excision repair protein rhp23 [Cryptococcus neoformans var. neoformans JEC21] gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans var. neoformans JEC21] 8.0e-15
FL-Next: tr=RAD23; Pinus sylvestris var. mongolica. 0.0
Internal
sp_v3.0_unigene76987 SustainPine v3.0 190
AutoFact: Ubiquitin carrier protein (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJR0_HYAOR 4.0e-16
FL-Next: tr=Ubiquitin-conjugating enzyme UBC1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Ubiquitin carrier protein 0.0
Misassembled
sp_v3.0_unigene77383 SustainPine v3.0 376
AutoFact: E3 ubiquitin protein ligase upl2, putative n=1 Tax=Ricinus communis RepID=B9S9V5_RICCO 2.0e-11
FL-Next: sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 6.584e-09
C-terminus
sp_v3.0_unigene77504 SustainPine v3.0 211
AutoFact: PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB 4.0e-16
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene78628 SustainPine v3.0 253
AutoFact: Alpha chain of nascent polypeptide associated complex n=2 Tax=Solanaceae RepID=A2PYH3_NICBE 8.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nascent polypeptide-associated complex subunit alpha-like protein 9.453e-09
C-terminus
sp_v3.0_unigene79382 SustainPine v3.0 177
AutoFact: Contains similarity to ubiquitin carboxyl-terminal hydrolase 14 gb|Z35927 from S. cerevisiae [Arabidopsis thaliana] 1.0e-05
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 8.772e-06
Internal
sp_v3.0_unigene80038 SustainPine v3.0 190
AutoFact: ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] gb|AAF40452.1|AC004809_10 ESTs gb|N65605, gb|N38087, gb|T20485, gb|T13726, gb|N38339, gb|F15440 and gb|N97201 come from this gene [Arabidopsis thaliana] gb|AAL32687.1| Unknow 4.0e-07
FL-Next: tr=Os02g0504500 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene80058 SustainPine v3.0 180
AutoFact: putative helicase [Oryza sativa Japonica Group] 2.0e-24
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative RNA helicase A 3.02e-11
Internal
sp_v3.0_unigene80848 SustainPine v3.0 172
AutoFact: PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene85799 SustainPine v3.0 403
AutoFact: PREDICTED: similar to Ca/calmodulin-dependent protein kinase phosphatase-N [Nasonia vitripennis] 6.0e-06
Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.276e-12
coding
sp_v3.0_unigene97259 SustainPine v3.0 345
AutoFact: putative ubiquitin-protein ligase 1 [Oryza sativa Japonica Group] 1.0e-07
FL-Next: sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene99105 SustainPine v3.0 529
AutoFact: SNF2 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MP52_ARALL 6.0e-11
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.435e-07
C-terminus
sp_v3.0_unigene99168 SustainPine v3.0 1143
AutoFact: Nascent polypeptide-associated complex subunit alpha-like protein n=2 Tax=Pinaceae RepID=NACA_PINTA 0.0
FL-Next: sp=Nascent polypeptide-associated complex subunit alpha-like protein; Pinus taeda (Loblolly pine). 0.0
Sma3: Alpha-NAC-like protein 0.0
Complete
sp_v3.0_unigene99512 SustainPine v3.0 640
AutoFact: PREDICTED: similar to ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome), partial [Strongylocentrotus purpuratus] ref|XP_780810.2| PREDICTED: similar to ubiquitin protein ligase E3A (human papilloma virus E6-asso 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: E3 ubiquitin-protein ligase 4.755e-09
C-terminus
sp_v3.0_unigene102098 SustainPine v3.0 615
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 3.728e-16
Putative N-terminus
sp_v3.0_unigene102887 SustainPine v3.0 741
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 5.21e-07
Internal
sp_v3.0_unigene103079 SustainPine v3.0 836
AutoFact: PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB 0.0
FL-Next: sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene103599 SustainPine v3.0 548
AutoFact: [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain