Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ubiquitin-associated/translation elongation factor EF1B, N-terminal

Term: IPR000449  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene41167 SustainPine v3.0 640
AutoFact: Contains similarity to ubiquitin carboxyl-terminal hydrolase 14 gb|Z35927 from S. cerevisiae [Arabidopsis thaliana] 1.0e-22
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 1.577e-09
N-terminus
sp_v3.0_unigene41551 SustainPine v3.0 152
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 2.0e-17
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene41752 SustainPine v3.0 161
AutoFact: DNA (cytosine-5)-methyltransferase DRM2 n=2 Tax=Arabidopsis RepID=DRM2_ARATH 4.0e-11
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative DNA cytosine methyltransferase Zmet3 1.656e-08
Internal
sp_v3.0_unigene41992 SustainPine v3.0 156
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 7.0e-19
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 6.053e-16
Internal
sp_v3.0_unigene42178 SustainPine v3.0 292
Sma3: cDNA clone:006-202-F04, full insert sequence 7.31e-06
unknown
sp_v3.0_unigene42926 SustainPine v3.0 452
AutoFact: SNF2 superfamily RAD5 protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S188_PHYPA 2.0e-30
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.343e-07
Internal
sp_v3.0_unigene42983 SustainPine v3.0 1143
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.995e-16
Putative N-terminus
sp_v3.0_unigene44382 SustainPine v3.0 1524
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene44800 SustainPine v3.0 267
AutoFact: ubiquitin-protein ligase 2 [Arabidopsis thaliana] 3.0e-09
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 3.983e-09
Internal
sp_v3.0_unigene48118 SustainPine v3.0 334
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 5.61e-14
Internal
sp_v3.0_unigene48361 SustainPine v3.0 220
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene51444 SustainPine v3.0 709
AutoFact: Ubiquitin carrier protein n=4 Tax=Viridiplantae RepID=C5X897_SORBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene52410 SustainPine v3.0 364
AutoFact: PREDICTED: similar to RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019849D7 4.0e-17
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative DNA helicase RecQsim 3.449e-09
Internal
sp_v3.0_unigene53011 SustainPine v3.0 345
AutoFact: putative DNA repair protein RAD23-1 [Arabidopsis thaliana] gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana] 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 1.884e-11
Putative Complete
sp_v3.0_unigene53594 SustainPine v3.0 388
AutoFact: PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB 2.0e-34
FL-Next: sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene54526 SustainPine v3.0 244
AutoFact: Ubiquitin-conjugating enzyme E2 35 n=42 Tax=Embryophyta RepID=UBC35_ARATH 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
Internal
sp_v3.0_unigene54731 SustainPine v3.0 287
AutoFact: E3 ubiquitin protein ligase upl2, putative n=1 Tax=Ricinus communis RepID=B9S9V5_RICCO 5.0e-11
FL-Next: sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene55091 SustainPine v3.0 431
AutoFact: Nascent polypeptide-associated complex subunit alpha n=3 Tax=Ajellomyces dermatitidis RepID=C5GQA1_AJEDR 6.0e-35
FL-Next: sp=Nascent polypeptide-associated complex subunit alpha-like protein; Pinus taeda (Loblolly pine). 0.0
Sma3: Nascent polypeptide-associated complex alpha subunit-like protein 3.988e-12
Putative C-terminus
sp_v3.0_unigene56591 SustainPine v3.0 102
AutoFact: Putative DNA repair protein n=1 Tax=Ipomoea trifida RepID=Q6JJ38_IPOTF 5.0e-11
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.361e-07
Internal
sp_v3.0_unigene57020 SustainPine v3.0 390
AutoFact: 5-AMP-activated protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SVJ9_RICCO 1.0e-19
FL-Next: Isoform 2 of SNF1-related protein kinase catalytic subunit alpha KIN11 OS=Arabidopsis thaliana GN=KIN11 0.0
Sma3: SNF1-related protein kinase 1.356e-18
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain