Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding domain, S1, IF1 type

Term: IPR006196  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1742 SustainPine v3.0 1219
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene6170 SustainPine v3.0 1326
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AEC09877.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene12468 SustainPine v3.0 1318
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AEC09877.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene29652 SustainPine v3.0 862
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30108 SustainPine v3.0 1010
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene32418 SustainPine v3.0 845
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene36137 SustainPine v3.0 833
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene36612 SustainPine v3.0 463
• AutoFact: Heat shock protein STI n=5 Tax=Andropogoneae RepID=B6U6S4_MAIZE 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 8.694e-12
C-terminus
sp_v3.0_unigene48053 SustainPine v3.0 1071
• AutoFact: Transcription factor IIIC, subunit 5 [Arabidopsis thaliana] gb|AEE78539.1| Transcription factor IIIC, subunit 5 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: Chromosome chr5 scaffold_72, whole genome shotgun sequence 3.379e-06
Putative C-terminus
sp_v3.0_unigene71792 SustainPine v3.0 230
• AutoFact: Eukaryotic translation initiation factor 1A n=8 Tax=Spermatophyta RepID=IF1A_ONOVI 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 3.73e-15
Putative N-terminus
sp_v3.0_unigene133113 SustainPine v3.0 234
unknown
sp_v3.0_unigene151034 SustainPine v3.0 290
• AutoFact: Eukaryotic translation initiation factor 1A, Y-chromosomal n=1 Tax=Ascaris suum RepID=F1KZC0_ASCSU 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 2.907e-19
Putative C-terminus
sp_v3.0_unigene153975 SustainPine v3.0 379
• AutoFact: Bacterial translation initiation factor 1 (BIF-1) n=2 Tax=Bacteroidetes RepID=F2II62_FLUTR 2.0e-28
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: Translation initiation factor IF-1, chloroplastic 0.0
Complete
sp_v3.0_unigene154570 SustainPine v3.0 374
• AutoFact: Eukaryotic translation initiation factor 1A, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NI73_PHYIT 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 3.52e-15
C-terminus
sp_v3.0_unigene155094 SustainPine v3.0 575
• AutoFact: Preprotein translocase subunit secY n=4 Tax=Oxalobacteraceae RepID=A4G9R8_HERAR 0.0
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
Complete
sp_v3.0_unigene155351 SustainPine v3.0 273
• AutoFact: eukaryotic translation initiation factor 1A, Y-chromosomal [Aspergillus oryzae RIB40] ref|XP_002380951.1| eukaryotic translation initiation factor eIF-1A subunit, putative [Aspergillus flavus NRRL3357] dbj|BAE62760.1| unnamed protein product [Aspergillus 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 3.644e-11
N-terminus
sp_v3.0_unigene155566 SustainPine v3.0 306
• AutoFact: Translation initiation factor IF-1 n=9 Tax=Actinobacteria (class) RepID=IF1_NOCSJ 6.0e-32
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: Translation initiation factor IF-1, chloroplastic 0.0
Complete
sp_v3.0_unigene156655 SustainPine v3.0 394
• AutoFact: Translation initiation factor IF-1 1 n=28 Tax=Actinomycetales RepID=IF11_STRAW 2.0e-23
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
• Sma3: Translation initiation factor IF-1, chloroplastic 8.492e-21
Putative Complete
sp_v3.0_unigene163507 SustainPine v3.0 382
• AutoFact: translation initiation factor eIF-1A [Babesia bovis T2Bo] gb|EDO08707.1| translation initiation factor eIF-1A, putative [Babesia bovis] 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 2.907e-19
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain