Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

Term: IPR008193  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene983 SustainPine v3.0 3457
AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9R8W9_RICCO 0.0
FL-Next: sp=Histone-lysine N-methyltransferase ATX2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 1.535e-15
Putative Complete
sp_v3.0_unigene1689 SustainPine v3.0 900
AutoFact: DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2751 SustainPine v3.0 1434
AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Trithorax, putative 2.532e-08
Putative Complete
sp_v3.0_unigene7789 SustainPine v3.0 1230
AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 1.305e-12
Putative Complete
sp_v3.0_unigene16016 SustainPine v3.0 1220
AutoFact: DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis thaliana] gb|AAC49454.1| Ar 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18503 SustainPine v3.0 971
AutoFact: DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30476 SustainPine v3.0 551
AutoFact: DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis thaliana] gb|AAC49454.1| Ar 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene32563 SustainPine v3.0 813
AutoFact: DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis thaliana] gb|AAC49454.1| Ar 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene42444 SustainPine v3.0 1415
AutoFact: Phd finger protein, putative n=1 Tax=Ricinus communis RepID=B9SP39_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 1.141e-12
Putative Complete
sp_v3.0_unigene102833 SustainPine v3.0 722
AutoFact: histone-lysine N-methyltransferase ATX1 [Arabidopsis thaliana] sp|Q9C5X4.2|ATX1_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX1; AltName: Full=Protein SET DOMAIN GROUP 27; AltName: Full=Trithorax-homolog protein 1; Short=TRX-homolog protein 1 0.0
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Sma3: SET domain protein 4.007e-13
Internal
sp_v3.0_unigene110554 SustainPine v3.0 481
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IA87_POPTR 0.0
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Sma3: Trithorax-like protein, histone-lysine N-methyltransferase 2.541e-12
Internal
sp_v3.0_unigene126955 SustainPine v3.0 518
AutoFact: potential RNA Polymerase I and III shared subunit Rpc19 [Candida albicans SC5314] ref|XP_710695.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida albicans SC5314] gb|EAK91447.1| potential RNA Polymerase I and III shared subunit Rpc19 [Ca 6.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene163113 SustainPine v3.0 337
AutoFact: DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis thaliana] gb|AAC49454.1| Ar 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene184405 SustainPine v3.0 521
AutoFact: DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana] sp|Q38859.1|RPB11_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II 13.6 kDa polypeptide; 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase II subunit J 2.212e-09
Complete
sp_v3.0_unigene206404 SustainPine v3.0 497
AutoFact: DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana] gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis thaliana] gb|AAC49454.1| Ar 8.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain