Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Winged helix-turn-helix transcription repressor DNA-binding

Term: IPR011991  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene127341 SustainPine v3.0 799
AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene127388 SustainPine v3.0 1253
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene127456 SustainPine v3.0 794
AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene127591 SustainPine v3.0 684
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene127858 SustainPine v3.0 1432
AutoFact: 26S proteasome regulatory particle non-ATPase subunit3 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 2.707e-18
C-terminus
sp_v3.0_unigene127863 SustainPine v3.0 837
AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Putative Complete
sp_v3.0_unigene127950 SustainPine v3.0 815
AutoFact: Cullin-4 n=2 Tax=Arabidopsis RepID=CUL4_ARATH 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cullin 8.434e-18
Misassembled
sp_v3.0_unigene128989 SustainPine v3.0 434
AutoFact: HC2 multi-domain protein 8.0e-13
Sma3: Histone H1 6.02558e-44
coding
sp_v3.0_unigene129477 SustainPine v3.0 585
AutoFact: Putative cullin [Oryza sativa] 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin protein 5.815e-12
C-terminus
sp_v3.0_unigene129936 SustainPine v3.0 532
AutoFact: Caffeate O-methyltransferase (Fragment) n=5 Tax=Pinus taeda RepID=Q5IDC8_PINTA 0.0
FL-Next: tr=Caffeic acid O-3-methyltransferase; Pinus pinaster (Maritime pine). 0.0
Sma3: Caffeate O-methyltransferase 0.0
N-terminus
sp_v3.0_unigene130296 SustainPine v3.0 410
AutoFact: cullin 1C [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 9.447e-08
Internal
sp_v3.0_unigene131112 SustainPine v3.0 319
AutoFact: COP9 signalosome complex subunit 2 n=3 Tax=Brassicaceae RepID=CSN2_ARATH 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 2 2.893e-13
N-terminus
sp_v3.0_unigene131589 SustainPine v3.0 623
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RX26_PHYPA 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene132469 SustainPine v3.0 459
AutoFact: CUL1 n=9 Tax=Poaceae RepID=Q5ZC88_ORYSJ 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene132798 SustainPine v3.0 281
AutoFact: High-affinity cationic amino acid transporter 1 n=3 Tax=Andropogoneae RepID=B6U1T8_MAIZE 5.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene133170 SustainPine v3.0 358
AutoFact: PREDICTED: similar to hCG1783917, n=1 Tax=Monodelphis domestica RepID=UPI0000F2EA6F 2.0e-05
Sma3: Adhesive/proline-rich protein 1.936e-07
coding
sp_v3.0_unigene133439 SustainPine v3.0 402
AutoFact: Putative cullin [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 7.636e-08
Internal
sp_v3.0_unigene133453 SustainPine v3.0 491
AutoFact: PCI domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 4 3.541e-09
C-terminus
sp_v3.0_unigene135437 SustainPine v3.0 222
AutoFact: 26S proteasome regulatory subunit N5 n=1 Tax=Arabidopsis thaliana RepID=B3H6B0_ARATH 1.0e-11
FL-Next: tr=26S proteasome p55 protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 26S proteasome subunit RPN5b 1.354e-09
Misassembled
sp_v3.0_unigene136158 SustainPine v3.0 398
AutoFact: Caffeic acid O-methyltransferase n=1 Tax=Rosa chinensis var. spontanea RepID=Q7X9I9_ROSCH 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain