Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: F-box domain, cyclin-like

Term: IPR001810  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene184607 SustainPine v3.0 307
• AutoFact: F-box-like protein (Fragment) n=9 Tax=Picea sitchensis RepID=E0ZA00_PICSI 4.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene184621 SustainPine v3.0 454
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 5.0e-40
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.666e-08
C-terminus
sp_v3.0_unigene184753 SustainPine v3.0 501
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 2.608e-10
Putative C-terminus
sp_v3.0_unigene185345 SustainPine v3.0 616
• AutoFact: Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase n=2 Tax=Pinaceae RepID=A6Y879_PINRA 1.99965e-42
• FL-Next: tr=Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase 1.814e-23
N-terminus
sp_v3.0_unigene185762 SustainPine v3.0 276
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene186335 SustainPine v3.0 530
• AutoFact: F-box protein 2 [Arabidopsis thaliana] ref|NP_001190352.1| F-box protein 2 [Arabidopsis thaliana] sp|Q94AD8.1|FBW3_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At5g21040 gb|AAK82516.1| T10F18_70/T10F18_70 [Arabidopsis thaliana] gb|AAO11609.1| 2.0e-12
• FL-Next: sp=F-box/WD-40 repeat-containing protein At5g21040; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene186485 SustainPine v3.0 303
• AutoFact: Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O82216_ARATH 5.0e-19
• FL-Next: tr=Putative non-LTR retroelement reverse transcriptase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene186705 SustainPine v3.0 380
• AutoFact: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9HT85_POPTR 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene187117 SustainPine v3.0 223
• AutoFact: Unassigned protein 8.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene187297 SustainPine v3.0 429
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene187311 SustainPine v3.0 406
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 9.237e-18
C-terminus
sp_v3.0_unigene187681 SustainPine v3.0 232
• AutoFact: OSJNBa0053B21.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XKR0_ORYSJ 2.0e-18
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified, expressed 4.848e-06
Putative C-terminus
sp_v3.0_unigene187874 SustainPine v3.0 334
• AutoFact: Unassigned protein
• FL-Next: sp=F-box/kelch-repeat protein At5g26960; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene189004 SustainPine v3.0 789
• AutoFact: F-box protein [Arabidopsis thaliana] sp|Q3E6P4.1|FB95_ARATH RecName: Full=F-box protein At2g02240 gb|AEC05560.1| F-box protein [Arabidopsis thaliana] 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_261, whole genome shotgun sequence 2.838e-16
N-terminus
sp_v3.0_unigene189224 SustainPine v3.0 1142
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 1.905e-11
Putative N-terminus
sp_v3.0_unigene189448 SustainPine v3.0 1166
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.02e-18
C-terminus
sp_v3.0_unigene189747 SustainPine v3.0 194
• AutoFact: Kelch repeat-containing F-box protein-like n=3 Tax=Oryza sativa RepID=Q6K649_ORYSJ 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene189854 SustainPine v3.0 300
• AutoFact: F-box-like protein (Fragment) n=9 Tax=Picea sitchensis RepID=E0ZA00_PICSI 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene189973 SustainPine v3.0 586
• AutoFact: Riboflavin kinase n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6L1_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; (Phytophthora megasperma f. sp. glycines). 0.0
Complete
sp_v3.0_unigene192238 SustainPine v3.0 327
• AutoFact: ABC transporter family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23AM2_TETTH 7.0e-36
• FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
• Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain