Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Tetratricopeptide-like helical

Term: IPR011990  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene14862 SustainPine v3.0 384
• AutoFact: pfam12854, PPR_1, PPR repeat 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14878 SustainPine v3.0 872
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 3.902e-17
C-terminus
sp_v3.0_unigene14883 SustainPine v3.0 314
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 1.857e-07
Internal
sp_v3.0_unigene14921 SustainPine v3.0 1851
• AutoFact: coatomer-like protein, epsilon subunit [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene14957 SustainPine v3.0 1327
• AutoFact: zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana] sp|Q9FYF9.1|FB76_ARATH RecName: Full=F-box protein At1g67340 gb|AAG00241.1|AC002130_6 F1N21.16 [Arabidopsis thaliana] gb|AAL14418.1| At1g67340/F1N21_16 [Arabidopsis thali 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYND finger family protein 5.521e-08
C-terminus
sp_v3.0_unigene14965 SustainPine v3.0 853
• AutoFact: pentatricopeptide, putative [Oryza sativa Japonica Group] gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 9.237e-11
Internal
sp_v3.0_unigene14993 SustainPine v3.0 1484
• AutoFact: ATP binding protein n=2 Tax=Andropogoneae RepID=B6U8H2_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Map3k delta-1 protein kinase, putative 8.042e-22
C-terminus
sp_v3.0_unigene15034 SustainPine v3.0 627
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.887e-12
N-terminus
sp_v3.0_unigene15090 SustainPine v3.0 610
• AutoFact: DNA methyl transferase4 [Zea mays] gb|AAK40306.1| DNA methyltransferase ZMET4 [Zea mays] gb|ACF82728.1| unknown [Zea mays] 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene15232 SustainPine v3.0 414
• AutoFact: glutamine-rich protein 23 [Arabidopsis thaliana] sp|Q9SY69.1|PPR29_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g10270; AltName: Full=Protein GLUTAMINE-RICH PROTEIN 23 gb|AAD32877.1|AC005489_15 F14N23.15 [Arabidopsis thaliana] gb|AEE 1.0e-05
• FL-Next: sp=Pentatricopeptide repeat-containing protein At1g10270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene15363 SustainPine v3.0 369
• AutoFact: UDP-glucoronosyl/UDP-glucosyl transferase family protein 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene15392 SustainPine v3.0 350
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760 gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08881.1| pentatricopeptide repe 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene15535 SustainPine v3.0 929
• AutoFact: Eukaryotic initiation factor-like protein n=9 Tax=Oryza RepID=Q84PB3_ORYSJ 0.0
• FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
• Sma3: Translation initiation factor eIF(Iso)4G 1.124e-08
Internal
sp_v3.0_unigene15662 SustainPine v3.0 625
• AutoFact: Integrase n=1 Tax=Silene latifolia RepID=Q8S942_SILLA 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 5.022e-14
C-terminus
sp_v3.0_unigene15688 SustainPine v3.0 587
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 4.269e-09
Putative C-terminus
sp_v3.0_unigene15897 SustainPine v3.0 1876
• AutoFact: Pectin lyase-like protein n=2 Tax=Arabidopsis RepID=Q9CAL5_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polygalacturonase 0.0
Complete
sp_v3.0_unigene15903 SustainPine v3.0 1006
• AutoFact: LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] gb|AAU15177.1| At1g76060 [Arabidopsis thaliana] gb|AEE35791.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene15926 SustainPine v3.0 898
• AutoFact: proton gradient regulation 3 [Arabidopsis thaliana] sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850, chloroplastic; AltName: Full=Protein PROTON GRADIENT REGULATION 3; Flags: Precursor emb|CAB40755.1| putative p 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene15957 SustainPine v3.0 901
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860 emb|CAB86040.1| putative protein [Arabidopsis thaliana] gb|AED90528.1| pentatricopeptide repeat- 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene16117 SustainPine v3.0 573
• AutoFact: GDSL-lipase 1 (Fragment) n=1 Tax=Capsicum annuum RepID=Q0R4F7_CAPAN 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger protein, putative 1.382e-22
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain