Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Tetratricopeptide-like helical

Term: IPR011990  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene198757 SustainPine v3.0 395
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580 dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana] gb|AEE34255.1| pentatricopeptide rep 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene198848 SustainPine v3.0 415
• AutoFact: Flap endonuclease 1-A n=1 Tax=Physcomitrella patens subsp. patens RepID=FEN11_PHYPA 2.00386e-43
• FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene199066 SustainPine v3.0 428
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 5.619e-36
C-terminus
sp_v3.0_unigene199077 SustainPine v3.0 418
• AutoFact: APO protein 3 [Arabidopsis thaliana] ref|NP_001119475.1| APO protein 3 [Arabidopsis thaliana] sp|Q9FH50.1|APO3_ARATH RecName: Full=APO protein 3, mitochondrial; Flags: Precursor dbj|BAB08879.1| unnamed protein product [Arabidopsis thaliana] gb|AED97538.1| 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: APO protein 3, mitochondrial, putative 4.17e-09
C-terminus
sp_v3.0_unigene199236 SustainPine v3.0 599
• AutoFact: Unassigned protein 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene199362 SustainPine v3.0 339
• AutoFact: Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 4.641e-12
C-terminus
sp_v3.0_unigene199639 SustainPine v3.0 344
• AutoFact: PREDICTED: similar to Clathrin, heavy polypeptide (Hc) n=1 Tax=Ciona intestinalis RepID=UPI000180C219 7.0e-34
• FL-Next: sp=Clathrin heavy chain 2; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Clathrin heavy chain 3.93e-12
Internal
sp_v3.0_unigene200015 SustainPine v3.0 320
• AutoFact: MIF4G and MA3 domain-containing protein [Arabidopsis thaliana] gb|AAC63673.1| putative eukaryotic initiation factor 4, eIF4 [Arabidopsis thaliana] gb|AEC07523.1| MIF4G and MA3 domain-containing protein [Arabidopsis thaliana] 3.0e-31
• FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
• Sma3: Translation initiation factor eIF(Iso)4G 6.042e-09
Internal
sp_v3.0_unigene200237 SustainPine v3.0 372
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQT3_PHATC 2.0e-34
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative N-terminus
sp_v3.0_unigene200239 SustainPine v3.0 456
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 7.003e-09
C-terminus
sp_v3.0_unigene200420 SustainPine v3.0 548
• AutoFact: Endomembrane protein 70-like protein, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYN6_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transmembrane 9 superfamily protein member 1 4.652e-12
Internal
sp_v3.0_unigene200795 SustainPine v3.0 507
• AutoFact: aldo/keto reductase [Fragaria x ananassa] 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aldo-keto reductase, putative 5.796e-34
Internal
sp_v3.0_unigene200872 SustainPine v3.0 226
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene200968 SustainPine v3.0 291
• AutoFact: AAA-type ATPase family protein n=1 Tax=Arabidopsis thaliana RepID=B3H533_ARATH 7.00649e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasomal ATPase 5.335e-08
Internal
sp_v3.0_unigene200980 SustainPine v3.0 607
• AutoFact: TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro] gb|AAZ71514.1| TPR repeat [Methanosarcina barkeri str. Fusaro] 4.0e-08
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene201034 SustainPine v3.0 173
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: cDNA, clone: J065206N09, full insert sequence 9.747e-06
Internal
sp_v3.0_unigene201110 SustainPine v3.0 381
• AutoFact: Unassigned protein
• FL-Next: sp=Protein TONSOKU; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene201119 SustainPine v3.0 397
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 3.388e-31
C-terminus
sp_v3.0_unigene201336 SustainPine v3.0 367
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.76564e-43
Internal
sp_v3.0_unigene201437 SustainPine v3.0 318
• AutoFact: Putative Zea mays retrotransposon Opie-2 n=2 Tax=Oryza sativa Japonica Group RepID=Q8H7T1_ORYSJ 7.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain