Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene28623 SustainPine v3.0 1270
• AutoFact: RING-H2 finger protein ATL68 [Arabidopsis thaliana] sp|Q9M313.1|ATL68_ARATH RecName: Full=RING-H2 finger protein ATL68 gb|AAL16112.1|AF428280_1 AT3g61550/F2A19_150 [Arabidopsis thaliana] emb|CAB71085.1| putative protein [Arabidopsis thaliana] gb|AAM51602. 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RING-H2 finger protein ATL2M 4.591e-08
Putative Complete
sp_v3.0_unigene29052 SustainPine v3.0 911
• AutoFact: E3 ubiquitin-protein ligase BAH1 [Arabidopsis thaliana] sp|Q9SRX9.1|BAH1_ARATH RecName: Full=E3 ubiquitin-protein ligase BAH1; AltName: Full=Protein BENZOIC ACID HYPERSENSITIVE 1; AltName: Full=Protein NITROGEN LIMITATION ADAPTATION gb|AAF02879.1|AC009525 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin-protein ligase, putative 2.744e-07
C-terminus
sp_v3.0_unigene29269 SustainPine v3.0 1923
• AutoFact: pfam03145, Sina, Seven in absentia protein family 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_203, whole genome shotgun sequence 1.108e-08
Complete
sp_v3.0_unigene29484 SustainPine v3.0 2268
• AutoFact: Zinc finger, C3HC4 type family protein n=3 Tax=Andropogoneae RepID=B6SSJ0_MAIZE 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rnf5, putative 4.863e-11
Complete
sp_v3.0_unigene29807 SustainPine v3.0 1123
• AutoFact: Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bet v I allergen-like 8.553e-18
Complete
sp_v3.0_unigene31052 SustainPine v3.0 587
• AutoFact: RING-H2 finger protein ATL1R n=1 Tax=Zea mays RepID=B4FPP9_MAIZE 9.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene31369 SustainPine v3.0 665
• AutoFact: zinc finger family protein [Picea abies] 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RING-H2 finger protein ATL2M 9.892e-08
Putative Complete
sp_v3.0_unigene31427 SustainPine v3.0 417
• AutoFact: Similarity to RING zinc finger protein n=2 Tax=Arabidopsis RepID=Q9LS98_ARATH 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Similarity to RING zinc finger protein 2.289e-07
Putative C-terminus
sp_v3.0_unigene31615 SustainPine v3.0 1036
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAF79455.1|AC025808_37 F18O14.3 [Arabidopsis thaliana] gb|AAL15335.1| At1g19310/F18O14_14 [Arabidopsis thaliana] gb|AAM51593.1| At1g19310/F18O14_14 [Arabidopsis thaliana] gb|AAM62463.1| unknow 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene31729 SustainPine v3.0 608
• AutoFact: PLAC8 domain containing protein 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: PGPS/D12 5.638e-20
N-terminus
sp_v3.0_unigene31880 SustainPine v3.0 601
• AutoFact: putative E3 ubiquitin-protein ligase ARI8 [Arabidopsis thaliana] sp|Q8W468.1|ARI8_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI8; AltName: Full=ARIADNE-like protein ARI8; AltName: Full=Protein ariadne homolog 8 gb|AAL32886.1| Unknown protei 8.0e-13
• FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI8; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein ariadne-1, putative 1.284e-07
Putative C-terminus
sp_v3.0_unigene31956 SustainPine v3.0 774
• AutoFact: RING-H2 finger protein ATL73 [Arabidopsis thaliana] sp|Q9FLC6.1|ATL73_ARATH RecName: Full=RING-H2 finger protein ATL73; Flags: Precursor dbj|BAB09971.1| RING zinc finger protein-like [Arabidopsis thaliana] gb|AED90850.1| RING-H2 finger protein ATL73 [Arab 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RING-H2 finger protein ATL5A 2.59e-14
C-terminus
sp_v3.0_unigene32640 SustainPine v3.0 1136
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAF79455.1|AC025808_37 F18O14.3 [Arabidopsis thaliana] gb|AAL15335.1| At1g19310/F18O14_14 [Arabidopsis thaliana] gb|AAM51593.1| At1g19310/F18O14_14 [Arabidopsis thaliana] gb|AAM62463.1| unknow 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene32879 SustainPine v3.0 840
• AutoFact: PLAC8 family protein [Arabidopsis thaliana] sp|Q9M9A5.1|PCR6_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 6; Short=AtPCR6 gb|AAF69715.1|AC016041_20 F27J15.18 [Arabidopsis thaliana] gb|AAR24706.1| At1g49030 [Arabidopsis thaliana] gb|AAS47652.1| At1 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: PGPS/D12 6.68e-20
Complete
sp_v3.0_unigene34235 SustainPine v3.0 2615
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAM20562.1| unknown protein [Arabidopsis thaliana] gb|AAN15601.1| unknown protein [Arabidopsis thaliana] gb|AED90414.1| RING/U-box domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=RING-H2 finger protein ATL40; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Zinc finger, C3HC4 type family protein 9.496e-06
Putative Complete
sp_v3.0_unigene34453 SustainPine v3.0 467
• AutoFact: RecName: Full=Probable prefoldin subunit 4; AltName: Full=VIP3 protein emb|CAB75507.1| VIP3 protein [Avena fatua] 9.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable prefoldin subunit 4 1.577e-09
N-terminus
sp_v3.0_unigene34472 SustainPine v3.0 492
• AutoFact: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative n=1 Tax=Ricinus communis RepID=B9RQ85_RICCO 4.0e-31
• FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 1.208e-31
Internal
sp_v3.0_unigene34487 SustainPine v3.0 1981
• AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MYK9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA repair helicase rad5,16, putative 5.762e-11
Putative Complete
sp_v3.0_unigene34729 SustainPine v3.0 661
• AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74); K10143 E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 9.041e-14
C-terminus
sp_v3.0_unigene34930 SustainPine v3.0 1004
• AutoFact: Cellulose synthase (Fragment) n=1 Tax=Pinus radiata RepID=Q4VWW6_PINRA 0.0
• FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cellulose synthase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain