Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene102733 SustainPine v3.0 586
AutoFact: E3 ubiquitin-protein ligase HOS1 [Arabidopsis thaliana] sp|Q84JU6.1|HOS1_ARATH RecName: Full=E3 ubiquitin-protein ligase HOS1; AltName: Full=Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1; AltName: Full=RING finger protein HOS1 gb|AAO42259.1| un 2.0e-37
FL-Next: sp=E3 ubiquitin-protein ligase HOS1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene102887 SustainPine v3.0 741
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 5.21e-07
Internal
sp_v3.0_unigene102957 SustainPine v3.0 363
AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9SNU8_RICCO 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ring finger protein, putative 8.431e-18
Internal
sp_v3.0_unigene103270 SustainPine v3.0 430
AutoFact: pfam12738, PTCB-BRCT, twin BRCT domain 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene103920 SustainPine v3.0 317
AutoFact: Ankyrin-repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RG78_RICCO 5.0e-20
FL-Next: sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104073 SustainPine v3.0 553
AutoFact: pfam00628, PHD, PHD-finger 2.0e-06
FL-Next: sp=Histone acetyltransferase HAC4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104275 SustainPine v3.0 690
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 9.481e-11
Internal
sp_v3.0_unigene104436 SustainPine v3.0 367
AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9SN70_RICCO 9.0e-32
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 1.361e-07
Internal
sp_v3.0_unigene104474 SustainPine v3.0 520
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.361e-07
Internal
sp_v3.0_unigene104491 SustainPine v3.0 491
AutoFact: Transcription-coupled repair protein CSB/RAD26 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 3.928e-26
Internal
sp_v3.0_unigene105317 SustainPine v3.0 646
AutoFact: RING-H2 finger protein ATL3C, putative n=1 Tax=Ricinus communis RepID=B9S4E7_RICCO 7.0e-34
FL-Next: sp=RING-H2 finger protein ATL72; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RING-H2 finger protein ATL5A 6.114e-07
Complete
sp_v3.0_unigene105368 SustainPine v3.0 217
AutoFact: Snf2 histone linker phd ring helicase, putative n=1 Tax=Ricinus communis RepID=B9S4G9_RICCO 2.0e-17
FL-Next: tr=Snf2 histone linker phd ring helicase, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene105741 SustainPine v3.0 401
AutoFact: RING-H2 finger protein ATL43 [Arabidopsis thaliana] gb|AAW81728.1| At5g05810 [Arabidopsis thaliana] gb|AAX49381.1| At5g05810 [Arabidopsis thaliana] gb|AED90928.1| RING-H2 finger protein ATL43 [Arabidopsis thaliana] 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ring finger protein, putative 2.129e-22
Internal
sp_v3.0_unigene106028 SustainPine v3.0 271
AutoFact: COP1 like protein [Arabidopsis thaliana] 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 8.033e-11
Putative N-terminus
sp_v3.0_unigene106203 SustainPine v3.0 195
AutoFact: F21M11.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZWC2_ARATH 6.0e-19
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Brca1 associated ring domain, putative 5.167e-09
Internal
sp_v3.0_unigene106227 SustainPine v3.0 409
AutoFact: putative COP1, constitutive photomorphogenesis 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP1 regulatory protein 1.256e-11
Putative N-terminus
sp_v3.0_unigene106377 SustainPine v3.0 532
AutoFact: SW2/SNF2 family-like protein n=1 Tax=Populus trichocarpa RepID=B9N1U6_POPTR 9.0e-35
FL-Next: tr=SW2/SNF2 family-like protein; subsp. trichocarpa). 0.0
N-terminus
sp_v3.0_unigene106556 SustainPine v3.0 427
AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 7.641e-14
Putative N-terminus
sp_v3.0_unigene106631 SustainPine v3.0 319
AutoFact: putative zinc finger protein [Oryza sativa Japonica Group] 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene106693 SustainPine v3.0 302
AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: FERONIA receptor-like kinase 1.23e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain