Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene48023 SustainPine v3.0 813
• AutoFact: Copine I-like protein n=4 Tax=Oryza RepID=Q6YYC5_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 6.254e-17
N-terminus
sp_v3.0_unigene48118 SustainPine v3.0 334
• AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase rad5,16, putative 5.61e-14
Internal
sp_v3.0_unigene48448 SustainPine v3.0 421
• AutoFact: RING-H2 finger protein ATL3 n=3 Tax=Arabidopsis RepID=ATL3_ARATH 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ring finger protein, putative 1.367e-12
Internal
sp_v3.0_unigene48998 SustainPine v3.0 292
• AutoFact: Suppressor of gene silencing 3 protein (Fragment) n=1 Tax=Picea abies RepID=B2KZJ3_PICAB 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 1.616e-09
Internal
sp_v3.0_unigene49220 SustainPine v3.0 334
• AutoFact: Putative DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase) n=2 Tax=Oryza sativa RepID=Q7XI36_ORYSJ 2.0e-20
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene49608 SustainPine v3.0 1278
• AutoFact: pfam00628, PHD, PHD-finger 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene50593 SustainPine v3.0 141
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S9D0_RICCO 2.0e-11
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene51536 SustainPine v3.0 284
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKN3_PHYPA 1.0e-08
• FL-Next: tr=SNF2 family DNA-dependent ATPase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene51694 SustainPine v3.0 1336
• AutoFact: Glycosyltransferase, CAZy family GT2 n=5 Tax=rosids RepID=B9N113_POPTR 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
C-terminus
sp_v3.0_unigene51724 SustainPine v3.0 585
• AutoFact: Cellulose synthase catalytic subunit n=2 Tax=Pinus RepID=Q5DI93_PINTA 3.0e-27
• FL-Next: tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene52120 SustainPine v3.0 401
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RAZ1_RICCO 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ring finger protein, putative 1.722e-15
Internal
sp_v3.0_unigene52479 SustainPine v3.0 414
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKN3_PHYPA 4.0e-21
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52624 SustainPine v3.0 147
• AutoFact: Gb|AAF01562.1 n=3 Tax=Arabidopsis RepID=Q9LVN6_ARATH 3.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 8.798e-18
Internal
sp_v3.0_unigene53114 SustainPine v3.0 444
• AutoFact: RING-H2 finger protein ATL74 [Arabidopsis thaliana] sp|Q9LZV8.1|ATL74_ARATH RecName: Full=RING-H2 finger protein ATL74 emb|CAB82758.1| putative protein [Arabidopsis thaliana] gb|AAR20739.1| At5g01880 [Arabidopsis thaliana] gb|AAR24751.1| At5g01880 [Arabid 8.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RING-H2 finger protein ATL5A 5.535e-11
Putative C-terminus
sp_v3.0_unigene53620 SustainPine v3.0 214
• AutoFact: ankyrin-repeat containing protein [Arabidopsis thaliana] 4.0e-23
• FL-Next: sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene53717 SustainPine v3.0 424
• AutoFact: Putative RING zinc finger protein [Oryza sativa Japonica Group] 2.0e-27
• FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene54197 SustainPine v3.0 99
• AutoFact: Unassigned protein 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene54721 SustainPine v3.0 147
• AutoFact: RING-H2 finger protein ATL74 [Arabidopsis thaliana] sp|Q9LZV8.1|ATL74_ARATH RecName: Full=RING-H2 finger protein ATL74 emb|CAB82758.1| putative protein [Arabidopsis thaliana] gb|AAR20739.1| At5g01880 [Arabidopsis thaliana] gb|AAR24751.1| At5g01880 [Arabid 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RING-H2 finger protein ATL5A 3.05e-15
Internal
sp_v3.0_unigene54757 SustainPine v3.0 262
• AutoFact: putative serine/threonine-specific protein kinase [Oryza sativa Japonica Group] gb|EAZ41462.1| hypothetical protein OsJ_25984 [Oryza sativa Japonica Group] dbj|BAH00920.1| unnamed protein product [Oryza sativa Japonica Group] 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine-specific protein kinase-like protein 5.097e-08
Internal
sp_v3.0_unigene55431 SustainPine v3.0 369
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain