Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene42716 SustainPine v3.0 571
AutoFact: cellulose synthase-like protein D4 [Populus tremuloides] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cellulose synthase 1.96182e-44
Putative C-terminus
sp_v3.0_unigene42926 SustainPine v3.0 452
AutoFact: SNF2 superfamily RAD5 protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S188_PHYPA 2.0e-30
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.343e-07
Internal
sp_v3.0_unigene42938 SustainPine v3.0 1264
AutoFact: PREDICTED: similar to SNF2 histone linker PHD RING helicase [Gallus gallus] 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene43090 SustainPine v3.0 591
AutoFact: PREDICTED: similar to zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Vitis vinifera RepID=UPI0001982E83 9.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ring finger protein, putative 8.156e-17
Internal
sp_v3.0_unigene43930 SustainPine v3.0 875
AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO 5.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene44186 SustainPine v3.0 753
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 8.985e-15
N-terminus
sp_v3.0_unigene44431 SustainPine v3.0 1178
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 homolog n=2 Tax=Oryza sativa RepID=SGS3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.953e-09
Putative C-terminus
sp_v3.0_unigene45016 SustainPine v3.0 463
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR 1.4013e-45
FL-Next: sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46130 SustainPine v3.0 561
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 3.709e-32
Internal
sp_v3.0_unigene46180 SustainPine v3.0 945
AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46278 SustainPine v3.0 1513
AutoFact: E3 ubiquitin-protein ligase ATL42 [Arabidopsis thaliana] sp|Q5XF85.2|ATL42_ARATH RecName: Full=E3 ubiquitin-protein ligase ATL42; AltName: Full=RING-H2 finger protein ATL42; Flags: Precursor emb|CAB43903.1| putative protein [Arabidopsis thaliana] emb|CAB8 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene46684 SustainPine v3.0 1918
AutoFact: peroxin 10 [Arabidopsis thaliana] sp|Q9SYU4.1|PEX10_ARATH RecName: Full=Peroxisome biogenesis factor 10; AltName: Full=PER10; AltName: Full=Peroxin-10; AltName: Full=Peroxisomal biogenesis factor 10; Short=AtPEX10; Short=AthPEX10; AltName: Full=Peroxisome 0.0
FL-Next: sp=Peroxisome biogenesis factor 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Peroxisome biogenesis factor 10 4.688e-09
Complete
sp_v3.0_unigene46870 SustainPine v3.0 2028
AutoFact: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RZD6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein ariadne-1, putative 9.93e-08
Putative Complete
sp_v3.0_unigene46989 SustainPine v3.0 366
AutoFact: cellulose synthase-like protein D3 [Arabidopsis thaliana] sp|Q9M9M4.1|CSLD3_ARATH RecName: Full=Cellulose synthase-like protein D3; Short=AtCslD3; AltName: Full=Protein KOJAK gb|AAF26119.1|AC012328_22 putative cellulose synthase catalytic subunit [Arabido 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cellulose synthase 5.32493e-44
Internal
sp_v3.0_unigene47294 SustainPine v3.0 403
AutoFact: F-box protein [Arabidopsis thaliana] sp|Q9M1I1.1|FB304_ARATH RecName: Full=F-box protein At3g54460 emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana] gb|AAM13867.1| unknown protein [Arabidopsis thaliana] gb|AAO42330.1| unknown protein [Arabid 0.0
FL-Next: sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene47623 SustainPine v3.0 343
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 3.188e-30
Internal
sp_v3.0_unigene47755 SustainPine v3.0 2170
AutoFact: Copine, putative n=1 Tax=Ricinus communis RepID=B9RAR5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copine, putative 1.213e-20
Complete
sp_v3.0_unigene47898 SustainPine v3.0 835
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein At4g10930; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48012 SustainPine v3.0 551
AutoFact: Unassigned protein
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48013 SustainPine v3.0 380
AutoFact: dehydrodolichyl diphosphate synthase 2 [Arabidopsis thaliana] sp|Q56Y11.2|DDPS2_ARATH RecName: Full=Dehydrodolichyl diphosphate synthase 2; Short=Dedol-PP synthase 2 dbj|BAA97345.1| unnamed protein product [Arabidopsis thaliana] gb|ACI31313.1| At5g58770 [ 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Undecaprenyl pyrophosphate synthetase 2.616e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain