Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene34999 SustainPine v3.0 898
• AutoFact: PLAC8 family protein [Arabidopsis thaliana] sp|P0CW97.1|PCR3_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 3; Short=AtPCR3 gb|AED93976.1| PLAC8 family protein [Arabidopsis thaliana] 8.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: PGPS/D12 5.446e-20
Complete
sp_v3.0_unigene35063 SustainPine v3.0 640
• AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 homolog n=2 Tax=Oryza sativa RepID=SGS3_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.694e-09
Internal
sp_v3.0_unigene35202 SustainPine v3.0 2622
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene35221 SustainPine v3.0 827
• AutoFact: Suppressor of gene silencing 3 protein (Fragment) n=1 Tax=Picea abies RepID=B2KZJ3_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.121e-09
N-terminus
sp_v3.0_unigene35684 SustainPine v3.0 1862
• AutoFact: Cellulose synthase (Fragment) n=1 Tax=Pinus radiata RepID=Q4VWW6_PINRA 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
C-terminus
sp_v3.0_unigene37460 SustainPine v3.0 777
• AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGV0.1|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb|ACN59385.1| leucine-rich repeat receptor-like 0.0
• FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Symbiosis receptor-like kinase 2.863e-16
Internal
sp_v3.0_unigene37556 SustainPine v3.0 2187
• AutoFact: Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9RC56_RICCO 3.9937e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cleavage and polyadenylation specificity factor, putative 6.45e-11
Complete
sp_v3.0_unigene37766 SustainPine v3.0 1188
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: FERONIA receptor-like kinase 1.162e-17
C-terminus
sp_v3.0_unigene37770 SustainPine v3.0 1485
• AutoFact: Glycosyltransferase, CAZy family GT2 n=5 Tax=rosids RepID=B9N113_POPTR 0.0
• FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cellulose synthase 0.0
C-terminus
sp_v3.0_unigene38682 SustainPine v3.0 1697
• AutoFact: RING finger-like protein [Oryza sativa Japonica Group] dbj|BAB90773.1| RING finger-like protein [Oryza sativa Japonica Group] dbj|BAG89633.1| unnamed protein product [Oryza sativa Japonica Group] 7.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene38820 SustainPine v3.0 558
• AutoFact: E3 ubiquitin-protein ligase BAH1 [Arabidopsis thaliana] sp|Q9SRX9.1|BAH1_ARATH RecName: Full=E3 ubiquitin-protein ligase BAH1; AltName: Full=Protein BENZOIC ACID HYPERSENSITIVE 1; AltName: Full=Protein NITROGEN LIMITATION ADAPTATION gb|AAF02879.1|AC009525 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene39142 SustainPine v3.0 274
• AutoFact: F-box protein [Arabidopsis thaliana] sp|Q9M1I1.1|FB304_ARATH RecName: Full=F-box protein At3g54460 emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana] gb|AAM13867.1| unknown protein [Arabidopsis thaliana] gb|AAO42330.1| unknown protein [Arabid 1.0e-30
• FL-Next: sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene39814 SustainPine v3.0 355
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S9D0_RICCO 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene40974 SustainPine v3.0 1297
• AutoFact: RING/U-box protein [Arabidopsis thaliana] gb|AEE82949.1| RING/U-box protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene41084 SustainPine v3.0 345
• AutoFact: putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical protein [Ipomoea trifida] 1.0e-32
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase rad5,16, putative 1.7e-07
Internal
sp_v3.0_unigene41380 SustainPine v3.0 125
• AutoFact: Cellulose synthase-like D3-1, glycosyltransferase family 2 protein n=2 Tax=Selaginella moellendorffii RepID=D8R581_SELML 1.0e-16
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 3.79752e-43
Internal
sp_v3.0_unigene41779 SustainPine v3.0 824
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gb|AEE80389.1| transducin/WD40 domain-containing protein [Arabidopsis thal 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-repeat domain phosphoinositide-interacting protein 3 7.399e-09
Internal
sp_v3.0_unigene41835 SustainPine v3.0 442
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-rich element binding factor 3 4.073e-16
C-terminus
sp_v3.0_unigene42360 SustainPine v3.0 1551
• AutoFact: E3 ubiquitin-protein ligase ATL42 [Arabidopsis thaliana] sp|Q5XF85.2|ATL42_ARATH RecName: Full=E3 ubiquitin-protein ligase ATL42; AltName: Full=RING-H2 finger protein ATL42; Flags: Precursor emb|CAB43903.1| putative protein [Arabidopsis thaliana] emb|CAB8 6.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ring finger protein, putative 5.968e-06
Complete
sp_v3.0_unigene42516 SustainPine v3.0 1003
• AutoFact: PLAC8 domain containing protein 6.02558e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: PGPS/D12 6.68e-20
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain