Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type

Term: IPR001841  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene143141 SustainPine v3.0 974
AutoFact: DUF716 domain containing protein 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene143189 SustainPine v3.0 400
AutoFact: TFIIF_alpha multi-domain protein 2.0e-33
Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 4.688e-09
coding
sp_v3.0_unigene143240 SustainPine v3.0 669
AutoFact: DUF716 domain containing protein 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene143284 SustainPine v3.0 536
AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9SNU8_RICCO 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene143491 SustainPine v3.0 604
AutoFact: DUF716 domain containing protein 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene143661 SustainPine v3.0 330
AutoFact: RING-finger protein n=1 Tax=Capsicum annuum RepID=Q08ET6_CAPAN 5.99994e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copine, putative 8.841e-21
Internal
sp_v3.0_unigene143847 SustainPine v3.0 691
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CHY zinc finger family protein, expressed 3.167e-07
Complete
sp_v3.0_unigene143858 SustainPine v3.0 501
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene143882 SustainPine v3.0 463
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene143933 SustainPine v3.0 459
AutoFact: similar to chaperonin containing TCP-1 complex gamma chain [Arabidopsis thaliana] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene144026 SustainPine v3.0 340
AutoFact: Unassigned protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene144078 SustainPine v3.0 461
AutoFact: similar to chaperonin containing TCP-1 complex gamma chain [Arabidopsis thaliana] 8.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene144127 SustainPine v3.0 382
AutoFact: putative RING-H2 finger protein ATL50 [Arabidopsis thaliana] sp|Q9FHG8.1|ATL50_ARATH RecName: Full=Putative RING-H2 finger protein ATL50 dbj|BAB09593.1| unnamed protein product [Arabidopsis thaliana] gb|AED96946.1| putative RING-H2 finger protein ATL50 [A 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene144270 SustainPine v3.0 804
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CHY zinc finger family protein, expressed 2.723e-07
Putative Complete
sp_v3.0_unigene144326 SustainPine v3.0 376
AutoFact: DUF716 domain containing protein 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene144345 SustainPine v3.0 318
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene144594 SustainPine v3.0 657
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 3.0e-23
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Sma3: Pollen-specific protein SF3, putative 2.573e-22
N-terminus
sp_v3.0_unigene144802 SustainPine v3.0 640
AutoFact: putative ring-box Roc1/Rbx1/Hrt1 protein [Olimarabidopsis pumila] 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RING-box protein 1a 9.115e-17
C-terminus
sp_v3.0_unigene145542 SustainPine v3.0 1135
AutoFact: protein alfin-like 6 [Arabidopsis thaliana] gb|AAM15031.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAO41953.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAO50537.1| putative PHD-type zinc finger protein [Arabi 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: PHD finger protein 1.746e-29
Putative Complete
sp_v3.0_unigene145929 SustainPine v3.0 687
AutoFact: [S] COG4886 Leucine-rich repeat (LRR) protein 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain