Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, C3HC4 RING-type

Term: IPR018957  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene137641 SustainPine v3.0 179
• AutoFact: pfam07002, Copine, Copine 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 5.793e-17
Internal
sp_v3.0_unigene137816 SustainPine v3.0 359
• AutoFact: Unassigned protein 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene138081 SustainPine v3.0 476
• AutoFact: pfam07576, BRAP2, BRCA1-associated protein 2 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene138270 SustainPine v3.0 401
• AutoFact: Unassigned protein 5.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene138361 SustainPine v3.0 324
• AutoFact: putative tRNA pseudouridine synthase [Arabidopsis thaliana] sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gb|AAC16945.1| putative pseudouridine 2.0e-11
• FL-Next: sp=Putative tRNA pseudouridine synthase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene138369 SustainPine v3.0 675
• AutoFact: PREDICTED: e3 ubiquitin-protein ligase DTX3L-like isoform 3 [Macaca mulatta] 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene138372 SustainPine v3.0 339
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 3.045e-07
Internal
sp_v3.0_unigene138455 SustainPine v3.0 724
• AutoFact: Ring zinc finger protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPF2_ORYSJ 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative cleavage and polyadenylation specifity factor 9.374e-08
N-terminus
sp_v3.0_unigene139667 SustainPine v3.0 283
unknown
sp_v3.0_unigene140453 SustainPine v3.0 767
• AutoFact: RING-H2 finger protein ATL47 [Arabidopsis thaliana] sp|Q8GW38.1|ATL47_ARATH RecName: Full=RING-H2 finger protein ATL47 dbj|BAC43674.1| unknown protein [Arabidopsis thaliana] gb|AAQ55274.1| At1g23980 [Arabidopsis thaliana] gb|AEE30463.1| RING-H2 finger pro 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene140536 SustainPine v3.0 593
• AutoFact: Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO 7.0e-20
• FL-Next: tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: FERONIA receptor-like kinase 2.451e-17
Internal
sp_v3.0_unigene140552 SustainPine v3.0 550
• AutoFact: RING protein n=1 Tax=Elaeis guineensis RepID=E3SER9_ELAGV 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene140608 SustainPine v3.0 701
• AutoFact: Copine III-like protein (Fragment) n=1 Tax=Picea abies RepID=B2KZF7_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 6.086e-11
C-terminus
sp_v3.0_unigene140746 SustainPine v3.0 181
• AutoFact: RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene140831 SustainPine v3.0 749
• AutoFact: RING finger and CHY zinc finger domain-containing protein 1 n=1 Tax=Zea mays RepID=B6T446_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CHY zinc finger family protein, expressed 2.227e-24
Putative N-terminus
sp_v3.0_unigene140834 SustainPine v3.0 579
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 1.22e-15
N-terminus
sp_v3.0_unigene140912 SustainPine v3.0 545
• AutoFact: RING-box protein 1a n=7 Tax=rosids RepID=RBX1A_ARATH 8.99634e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene141084 SustainPine v3.0 345
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S0D8_RICCO 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CHY zinc finger family protein, expressed 1.226e-13
Putative N-terminus
sp_v3.0_unigene141473 SustainPine v3.0 379
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RS80_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CHY zinc finger family protein, expressed 2.262e-20
Internal
sp_v3.0_unigene141479 SustainPine v3.0 554
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] dbj|BAB01736.1| unnamed protein product [Arabidopsis thaliana] gb|AAL67021.1| putative RING zinc finger protein [Arabidopsis thaliana] gb|AAO22812.1| putative RING zinc finger protein [Arabidopsi 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain