Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA helicase, DEAD-box type, Q motif

Term: IPR014014  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene21071 SustainPine v3.0 1476
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 6.725e-12
Putative Complete
sp_v3.0_unigene21763 SustainPine v3.0 1942
• AutoFact: ATP-dependent RNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 13 1.767e-08
Complete
sp_v3.0_unigene21935 SustainPine v3.0 788
• AutoFact: leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily protein [Arabidopsis thaliana] dbj|BAB11189.1| unnamed protein product [Arabidopsis thaliana] gb|AAL06927.1| AT5g23340/MKD15_20 [Arabidopsis thaliana] gb|AAM91352.1| At5g23340/MKD15_2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene21940 SustainPine v3.0 389
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 8.0e-12
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 40; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 14 2.985e-08
N-terminus
sp_v3.0_unigene22614 SustainPine v3.0 881
• AutoFact: GRP multi-domain protein 2.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene23664 SustainPine v3.0 3049
• AutoFact: RNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene23914 SustainPine v3.0 2102
• AutoFact: DEAD-box ATP-dependent RNA helicase 5 n=2 Tax=Oryza sativa RepID=RH5_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.49e-22
Complete
sp_v3.0_unigene26206 SustainPine v3.0 635
• AutoFact: DEAD box helicase n=1 Tax=Ectocarpus siliculosus RepID=D7FYP9_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 10 6.141e-08
C-terminus
sp_v3.0_unigene28919 SustainPine v3.0 2232
• AutoFact: DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gb|AAL38370.1| put 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene29080 SustainPine v3.0 311
• AutoFact: Probable DEAD-box ATP-dependent RNA helicase 48 n=3 Tax=Arabidopsis RepID=RH48_ARATH 2.0e-15
• FL-Next: sp=Probable DEAD-box ATP-dependent RNA helicase 48; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene30010 SustainPine v3.0 639
• AutoFact: PRP38_assoc multi-domain protein 2.0e-06
coding
sp_v3.0_unigene30089 SustainPine v3.0 1034
• AutoFact: MIP-T3 multi-domain protein 6.0e-16
putative_coding
sp_v3.0_unigene34219 SustainPine v3.0 2006
• AutoFact: putative F-box and leucine-rich repeat protein [Jatropha curcas] 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene34227 SustainPine v3.0 836
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 45 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 6.13e-08
Internal
sp_v3.0_unigene34884 SustainPine v3.0 1869
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56 sp|Q56XG6.3|RH15_ARATH RecName: Full=D 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene34932 SustainPine v3.0 1964
• AutoFact: RNA helicase [Arabidopsis thaliana] 6.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 31 1.003e-08
N-terminus
sp_v3.0_unigene35249 SustainPine v3.0 515
• AutoFact: DEAD box protein P68 [Pisum sativum] 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene35588 SustainPine v3.0 608
• AutoFact: DDRGK multi-domain protein 2.0e-08
coding
sp_v3.0_unigene35667 SustainPine v3.0 1033
• AutoFact: DEAD-box ATP-dependent RNA helicase 37 n=2 Tax=Oryza sativa Japonica Group RepID=RH37_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.076e-30
Internal
sp_v3.0_unigene36840 SustainPine v3.0 2677
• AutoFact: DEAD-box ATP-dependent RNA helicase 39 n=3 Tax=Oryza sativa RepID=RH39_ORYSJ 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 39; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 39 5.097e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain