Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene164732 SustainPine v3.0 166
AutoFact: DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16 emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana] emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana] 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 16 4.425e-09
Internal
sp_v3.0_unigene165273 SustainPine v3.0 321
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 3.548e-09
Internal
sp_v3.0_unigene165378 SustainPine v3.0 146
AutoFact: putative ATP-dependent RNA helicase [Oryza sativa] 1.0e-06
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 17; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene165424 SustainPine v3.0 90
AutoFact: RNA helicase-related protein required for pre-mRNA splicing [Scheffersomyces stipitis CBS 6054] gb|EAZ63248.2| RNA helicase-related protein required for pre-mRNA splicing [Pichia stipitis CBS 6054] 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
Internal
sp_v3.0_unigene166232 SustainPine v3.0 438
AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 3.00018e-42
FL-Next: tr=Activating signal cointegrator 1 complex subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene166387 SustainPine v3.0 451
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZU8_ORYSJ 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyprotein, putative 1.953e-06
N-terminus
sp_v3.0_unigene166452 SustainPine v3.0 413
AutoFact: 60S ribosomal protein L6 n=1 Tax=Postia placenta Mad-698-R RepID=B8P336_POSPM 0.0
FL-Next: sp=60S ribosomal protein L6; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L6 2.721e-38
N-terminus
sp_v3.0_unigene167050 SustainPine v3.0 142
AutoFact: putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] 1.0e-05
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene168155 SustainPine v3.0 180
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene168170 SustainPine v3.0 132
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.614e-08
Internal
sp_v3.0_unigene168220 SustainPine v3.0 82
AutoFact: Sec63 domain containing protein 7.0e-07
FL-Next: tr=Putative uncharacterized protein Sb04g000670; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene169019 SustainPine v3.0 271
AutoFact: Gly_rich multi-domain protein 7.0e-17
Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
AutoFact: GRP multi-domain protein 3.0e-16
Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene170028 SustainPine v3.0 603
AutoFact: Tymo_45kd_70kd multi-domain protein 5.0e-05
coding
sp_v3.0_unigene170036 SustainPine v3.0 237
AutoFact: GRP multi-domain protein 1.0e-10
Sma3: Putative glycine-rich protein 2.016e-08
coding
sp_v3.0_unigene170514 SustainPine v3.0 434
AutoFact: Drf_FH1 multi-domain protein 2.0e-10
coding
sp_v3.0_unigene171148 SustainPine v3.0 336
AutoFact: GRP multi-domain protein 9.0e-09
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene171933 SustainPine v3.0 418
AutoFact: DUF1777 multi-domain protein 7.0e-10
Sma3: ATP-dependent RNA helicase DDX23 2.447e-09
coding
sp_v3.0_unigene172075 SustainPine v3.0 216
AutoFact: TT_ORF1 multi-domain protein 3.0e-10
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain