Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene121372 SustainPine v3.0 233
• AutoFact: RNA helicase n=4 Tax=Arabidopsis RepID=Q9FNQ1_ARATH 5.0e-16
• FL-Next: tr=Uncharacterized protein; Oryza glaberrima (African rice). 0.0
Internal
sp_v3.0_unigene121512 SustainPine v3.0 172
• AutoFact: DNA polymerase theta subunit [Arabidopsis thaliana] dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] 8.0e-11
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene121536 SustainPine v3.0 480
• AutoFact: [L] COG4581 Superfamily II RNA helicase 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene122547 SustainPine v3.0 351
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Dicer-like protein 7.796e-10
Internal
sp_v3.0_unigene122743 SustainPine v3.0 534
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene123816 SustainPine v3.0 399
• AutoFact: putative ATP-dependent DNA helicase RECG [Arabidopsis thaliana] 8.0e-28
• FL-Next: tr=RecG; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene123985 SustainPine v3.0 226
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S033_RICCO 3.0e-22
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 50; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 50 3.449e-09
Internal
sp_v3.0_unigene124774 SustainPine v3.0 167
• AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SZG8_RICCO 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Helicase, putative 3.858e-09
Internal
sp_v3.0_unigene125218 SustainPine v3.0 274
• AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 3.0e-36
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.332e-09
Internal
sp_v3.0_unigene125357 SustainPine v3.0 376
• AutoFact: DNA Helicase [Arabidopsis thaliana] 8.0e-14
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125721 SustainPine v3.0 201
• AutoFact: ATP-dependent DNA helicase Q-like 1 n=1 Tax=Arabidopsis thaliana RepID=RQL1_ARATH 4.0e-19
• FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125952 SustainPine v3.0 237
• AutoFact: DEAD-box ATP-dependent RNA helicase 22 n=3 Tax=Oryza sativa RepID=RH22_ORYSJ 1.0e-18
• FL-Next: Isoform 2 of DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 22 1.736e-09
Internal
sp_v3.0_unigene126087 SustainPine v3.0 867
• AutoFact: ATP-dependent RNA helicase like protein [Arabidopsis thaliana] emb|CAB78627.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 1 6.363e-09
Putative C-terminus
sp_v3.0_unigene126726 SustainPine v3.0 1168
• AutoFact: Fructose-bisphosphate aldolase n=3 Tax=Picea sitchensis RepID=A9NUH5_PICSI 0.0
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Putative Complete
sp_v3.0_unigene126853 SustainPine v3.0 525
• AutoFact: 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] emb|CAB56756.1| 5,10-methylenetetrahydrofolate dehydrogenase: 5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetrahydrofolate dehydrogenase/cyclohydrolase 6.503e-12
Putative N-terminus
sp_v3.0_unigene127176 SustainPine v3.0 570
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 6.609e-08
Putative C-terminus
sp_v3.0_unigene127273 SustainPine v3.0 655
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.829e-08
C-terminus
sp_v3.0_unigene127278 SustainPine v3.0 90
• AutoFact: Atrophin-1 multi-domain protein 7.0e-08
unknown
sp_v3.0_unigene127327 SustainPine v3.0 1193
• AutoFact: Fructose-bisphosphate aldolase n=3 Tax=Picea sitchensis RepID=A9NUH5_PICSI 0.0
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Complete
sp_v3.0_unigene127397 SustainPine v3.0 1308
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=A9NMQ0_PICSI 0.0
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain