Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene110113 SustainPine v3.0 647
• AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana] gb|AED97426.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene110713 SustainPine v3.0 329
• AutoFact: putative RNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene110817 SustainPine v3.0 435
• AutoFact: PREDICTED: similar to ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019836E3 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Helicase, putative 8.032e-12
N-terminus
sp_v3.0_unigene111052 SustainPine v3.0 295
• AutoFact: putative helicase [Arabidopsis thaliana] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CarD-like transcriptional regulator family protein, expressed 4.688e-09
Putative N-terminus
sp_v3.0_unigene111453 SustainPine v3.0 210
• AutoFact: Probable DEAD-box ATP-dependent RNA helicase 48 n=3 Tax=Arabidopsis RepID=RH48_ARATH 2.0e-09
• FL-Next: sp=Probable DEAD-box ATP-dependent RNA helicase 48; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene112364 SustainPine v3.0 284
• AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 24 3.506e-09
Putative C-terminus
sp_v3.0_unigene112812 SustainPine v3.0 426
• AutoFact: putative ATP-dependent RNA helicase [Oryza sativa Japonica Group] 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: ATP-dependent RNA helicase, putative 9.306e-07
Internal
sp_v3.0_unigene113276 SustainPine v3.0 416
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T4R0_RICCO 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 2.11596e-43
Putative Complete
sp_v3.0_unigene113995 SustainPine v3.0 424
• AutoFact: dicer-like protein [Oryza sativa Indica Group] 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene114924 SustainPine v3.0 373
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.009e-08
Internal
sp_v3.0_unigene114946 SustainPine v3.0 300
• AutoFact: CAF protein [Arabidopsis thaliana] 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene114993 SustainPine v3.0 201
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 9.172e-10
Internal
sp_v3.0_unigene116395 SustainPine v3.0 299
• AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 5.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 24 3.506e-09
Internal
sp_v3.0_unigene117153 SustainPine v3.0 291
• AutoFact: ATP-dependent DNA helicase Q-like 1 [Arabidopsis thaliana] sp|Q9FT74.1|RQL1_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 1; AltName: Full=RecQ-like protein 1; Short=AtRecQ1; Short=AtRecQl1 emb|CAC14163.1| DNA Helicase [Arabidopsis thaliana] gb|AE 1.0e-14
• FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene118295 SustainPine v3.0 270
• AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA Helicase 5.61e-08
Internal
sp_v3.0_unigene118361 SustainPine v3.0 332
• AutoFact: RecName: Full=ATP-dependent RNA helicase DBP2 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 3.715e-08
Putative C-terminus
sp_v3.0_unigene119246 SustainPine v3.0 114
• AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 5.0e-08
• FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 0.0
• Sma3: Dicer-like protein 1.312e-13
Internal
sp_v3.0_unigene119791 SustainPine v3.0 223
• AutoFact: HUA enhancer 2 [Arabidopsis thaliana] 8.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Helicase, putative 2.108e-06
Internal
sp_v3.0_unigene120094 SustainPine v3.0 359
• AutoFact: DUF1777 multi-domain protein 2.0e-15
coding
sp_v3.0_unigene120981 SustainPine v3.0 369
• AutoFact: DNA Helicase [Arabidopsis thaliana] 0.0
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA helicase isolog 1.083e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain