Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene99096 SustainPine v3.0 261
• AutoFact: pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.918e-09
Internal
sp_v3.0_unigene99395 SustainPine v3.0 546
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Dicer-like protein 4.58e-20
Internal
sp_v3.0_unigene99602 SustainPine v3.0 673
• AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 6.474e-10
C-terminus
sp_v3.0_unigene99723 SustainPine v3.0 644
• AutoFact: copper ion transmembrane transporter [Arabidopsis thaliana] gb|AAM67286.1| unknown [Arabidopsis thaliana] gb|AEC09465.1| copper ion transmembrane transporter [Arabidopsis thaliana] 9.99995e-41
• FL-Next: sp=Probable DEAD-box ATP-dependent RNA helicase 48; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene100930 SustainPine v3.0 358
• AutoFact: DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16 emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana] emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana] 8.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 16 4.425e-09
Putative N-terminus
sp_v3.0_unigene101066 SustainPine v3.0 381
• AutoFact: Antiviral helicase SKI2 n=3 Tax=Arabidopsis thaliana RepID=F4JAA5_ARATH 6.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene101263 SustainPine v3.0 783
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp|Q93ZG7.2|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb|CAB64214 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 38 9.932e-09
Putative N-terminus
sp_v3.0_unigene101425 SustainPine v3.0 716
• AutoFact: PREDICTED: similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) [Canis familiaris] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.315e-23
Putative N-terminus
sp_v3.0_unigene101670 SustainPine v3.0 757
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 45; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 1.083e-08
C-terminus
sp_v3.0_unigene102098 SustainPine v3.0 615
• AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 3.728e-16
Putative N-terminus
sp_v3.0_unigene102741 SustainPine v3.0 566
• AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene102929 SustainPine v3.0 700
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene103424 SustainPine v3.0 304
• AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.952e-14
Internal
sp_v3.0_unigene103473 SustainPine v3.0 214
• AutoFact: [L] COG4581 Superfamily II RNA helicase 3.0e-11
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene103504 SustainPine v3.0 211
• AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-11
• FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene103683 SustainPine v3.0 335
• AutoFact: DEAD-box ATP-dependent RNA helicase 37 n=2 Tax=Oryza sativa Japonica Group RepID=RH37_ORYSJ 8.00001e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 37 3.659e-08
Internal
sp_v3.0_unigene104254 SustainPine v3.0 954
• AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA Helicase 2.996e-17
Putative C-terminus
sp_v3.0_unigene104728 SustainPine v3.0 441
• AutoFact: protein dicer-like 3 [Arabidopsis thaliana] emb|CAB88120.1| putative protein [Arabidopsis thaliana] gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene105016 SustainPine v3.0 507
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
• FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
• Sma3: Dicer-like 4 1.165e-08
N-terminus
sp_v3.0_unigene105143 SustainPine v3.0 299
• AutoFact: ATP-dependent DNA helicase RecQ, putative [Arabidopsis thaliana] 7.0e-19
• FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain