Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene83895 SustainPine v3.0 210
• AutoFact: Drf_FH1 multi-domain protein 2.0e-11
coding
sp_v3.0_unigene84077 SustainPine v3.0 284
• AutoFact: DUF3729 multi-domain protein 1.0e-08
coding
sp_v3.0_unigene85442 SustainPine v3.0 272
• AutoFact: PRP38_assoc multi-domain protein 5.0e-15
• Sma3: ATP-dependent RNA helicase DDX23 7.054e-10
coding
sp_v3.0_unigene85882 SustainPine v3.0 350
• AutoFact: TT_ORF1 multi-domain protein 3.0e-09
coding
sp_v3.0_unigene93607 SustainPine v3.0 2904
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SX92_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene94123 SustainPine v3.0 845
• AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene94218 SustainPine v3.0 314
• AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
• FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
• Sma3: DNA Helicase 1.082e-17
Internal
sp_v3.0_unigene95369 SustainPine v3.0 496
• AutoFact: putative ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] emb|CAL53346.1| putative ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] 2.0e-22
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene95489 SustainPine v3.0 267
• AutoFact: Pentatricopeptide repeat protein 77 n=1 Tax=Funaria hygrometrica RepID=F5CAE2_FUNHY 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.854e-09
Internal
sp_v3.0_unigene95613 SustainPine v3.0 656
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 8.17e-08
Putative N-terminus
sp_v3.0_unigene95666 SustainPine v3.0 462
• AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 2.0e-29
• FL-Next: sp=ATP-dependent DNA helicase Q-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA helicase, putative 6.802e-08
Putative N-terminus
sp_v3.0_unigene95918 SustainPine v3.0 316
• AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 3.0e-13
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene96094 SustainPine v3.0 673
• AutoFact: DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana] sp|Q9LU46.1|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35 dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana] dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 7.159e-08
C-terminus
sp_v3.0_unigene96401 SustainPine v3.0 695
• AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.94273e-44
• FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.047e-11
N-terminus
sp_v3.0_unigene97269 SustainPine v3.0 1305
• AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.094e-34
Internal
sp_v3.0_unigene97443 SustainPine v3.0 520
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 45 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.955e-12
Internal
sp_v3.0_unigene98337 SustainPine v3.0 720
• AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.628e-21
Internal
sp_v3.0_unigene98663 SustainPine v3.0 455
• AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene98994 SustainPine v3.0 461
• AutoFact: putative DEAD-box protein abstrakt [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.203e-08
Internal
sp_v3.0_unigene99035 SustainPine v3.0 1241
• AutoFact: Helicase, C-terminal [Medicago truncatula] 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.867e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain