Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene72561 SustainPine v3.0 242
• AutoFact: DEAD-box ATP-dependent RNA helicase 42 n=3 Tax=Arabidopsis RepID=RH42_ARATH 6.0e-12
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 42 4.107e-09
Internal
sp_v3.0_unigene73496 SustainPine v3.0 229
• AutoFact: ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130] gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130] 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.681e-09
C-terminus
sp_v3.0_unigene73593 SustainPine v3.0 418
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 7.0e-39
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene73635 SustainPine v3.0 522
• AutoFact: Eukaryotic initiation factor 4A n=16 Tax=Schizophora RepID=IF4A_DROME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 34 8.394e-08
Internal
sp_v3.0_unigene73671 SustainPine v3.0 427
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540 dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana] gb|AED91032.1| pentatricope 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene73722 SustainPine v3.0 478
• AutoFact: DNA polymerase theta/eta n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8P537_COPC7 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene73759 SustainPine v3.0 397
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=B8LMQ9_PICSI 1.0e-35
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Misassembled
sp_v3.0_unigene73970 SustainPine v3.0 294
• AutoFact: PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001985AA9 9.00054e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 4.276e-18
Internal
sp_v3.0_unigene73975 SustainPine v3.0 419
• AutoFact: Pentatricopeptide repeat protein 98 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE3_FUNHY 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 2.198e-23
Internal
sp_v3.0_unigene74417 SustainPine v3.0 200
• AutoFact: pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa Japonica Group] dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa Japonica Group] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 6.563e-08
Internal
sp_v3.0_unigene74429 SustainPine v3.0 121
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S355_RICCO 2.0e-08
• FL-Next: tr=ATP-dependent RNA helicase A-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene74470 SustainPine v3.0 206
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene74595 SustainPine v3.0 466
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 5.04467e-44
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene74609 SustainPine v3.0 457
• AutoFact: ATP-dependent RNA helicase DBP8 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=DBP8_CRYNB 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene74760 SustainPine v3.0 326
• AutoFact: Helicase, C-terminal [Medicago truncatula] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 2.032e-08
C-terminus
sp_v3.0_unigene74927 SustainPine v3.0 325
• AutoFact: DEAD/DEAH box helicase, putative n=2 Tax=Metarhizium RepID=E9EFH5_METAQ 5.0e-34
• FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene75039 SustainPine v3.0 192
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 n=3 Tax=Oryza sativa RepID=RH38_ORYSJ 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75176 SustainPine v3.0 280
• AutoFact: DNA polymerase theta/eta n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8P537_COPC7 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
Internal
sp_v3.0_unigene75229 SustainPine v3.0 343
• AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-22
• FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75320 SustainPine v3.0 93
• AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 9.0e-07
• FL-Next: tr=Putative uncharacterized protein F11I4_16; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain