Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helicase, C-terminal

Term: IPR001650  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene51417 SustainPine v3.0 599
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NP14_PICSI 2.0e-39
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene51456 SustainPine v3.0 664
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S384_PHYPA 2.0e-39
• FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromatin remodeling complex subunit 2.832e-06
Internal
sp_v3.0_unigene51536 SustainPine v3.0 284
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKN3_PHYPA 1.0e-08
• FL-Next: tr=SNF2 family DNA-dependent ATPase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene51578 SustainPine v3.0 234
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I5H9_ORYSJ 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene51681 SustainPine v3.0 501
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=A9NMQ0_PICSI 0.0
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
N-terminus
sp_v3.0_unigene52104 SustainPine v3.0 409
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 2.0e-25
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene52410 SustainPine v3.0 364
• AutoFact: PREDICTED: similar to RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019849D7 4.0e-17
• FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative DNA helicase RecQsim 3.449e-09
Internal
sp_v3.0_unigene52479 SustainPine v3.0 414
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKN3_PHYPA 4.0e-21
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52615 SustainPine v3.0 228
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GF82_POPTR 5.0e-05
• FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene52673 SustainPine v3.0 208
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 35A dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group] 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.203e-08
Internal
sp_v3.0_unigene52753 SustainPine v3.0 170
• AutoFact: SWI/SNF class chromatin remodeling complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSB9_PHYPA 1.0e-09
• FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SWI/SNF class chromatin remodeling complex protein 1.427e-08
Internal
sp_v3.0_unigene53365 SustainPine v3.0 431
• AutoFact: DNA polymerase theta subunit [Arabidopsis thaliana] dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] 1.0e-10
• FL-Next: tr=DNA polymerase I family protein expressed; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene53768 SustainPine v3.0 500
• AutoFact: Dicer-like 1b protein [Physcomitrella patens] 1.0e-22
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene53781 SustainPine v3.0 455
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 7.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 2.918e-08
Putative C-terminus
sp_v3.0_unigene54403 SustainPine v3.0 262
• AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 1.0e-09
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene55058 SustainPine v3.0 349
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene55117 SustainPine v3.0 335
• AutoFact: ATP-dependent RNA helicase DBP5 n=7 Tax=Arthrodermataceae RepID=C5FBW6_ARTOC 9.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: eIF-4A 4.471e-08
Putative C-terminus
sp_v3.0_unigene55124 SustainPine v3.0 479
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 7.612e-11
Internal
sp_v3.0_unigene55388 SustainPine v3.0 374
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TE42_PHYPA 5.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene55790 SustainPine v3.0 153
• AutoFact: Meiotic crossover 1 n=2 Tax=Oryza sativa Japonica Group RepID=B6DMK2_ORYSJ 1.0e-09
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain