Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helicase, superfamily 1/2, ATP-binding domain

Term: IPR014001  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene14176 SustainPine v3.0 457
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-31
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
N-terminus
sp_v3.0_unigene14271 SustainPine v3.0 794
AutoFact: probable ATP-dependent RNA helicase DDX59 [Danio rerio] gb|AAI34851.1| LOC562123 protein [Danio rerio] 5.0e-13
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 41 1.248e-09
Putative N-terminus
sp_v3.0_unigene14334 SustainPine v3.0 517
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AAK96883.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana] gb|AAM91118.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana] gb|AEE30889.1| helicase associated d 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 9.009e-07
Internal
sp_v3.0_unigene14394 SustainPine v3.0 638
AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2Y8_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 2.667e-11
C-terminus
sp_v3.0_unigene14516 SustainPine v3.0 302
AutoFact: DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana] sp|Q8W4E1.2|RH47_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 47, mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE 1586; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 1; 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14596 SustainPine v3.0 338
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710 emb|CAB66909.1| putative protein [Arabidopsis thaliana] gb|AEE78579.1| pentatricopeptide repeat- 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tetratricopeptide-like helical 3.652e-07
Internal
sp_v3.0_unigene14658 SustainPine v3.0 1789
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] gb|AED94034.1| putative DNA-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA helicase-like 3.335e-09
C-terminus
sp_v3.0_unigene14672 SustainPine v3.0 1280
AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
FL-Next: tr=U520, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene14702 SustainPine v3.0 561
AutoFact: DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana] sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene14757 SustainPine v3.0 560
AutoFact: regulator of telomere elongation helicase 1 [Arabidopsis thaliana] gb|AEE36333.1| regulator of telomere elongation helicase 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene14989 SustainPine v3.0 456
AutoFact: chromatin remodeling factor18 [Arabidopsis thaliana] gb|AEE32273.1| chromatin remodeling factor18 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene15060 SustainPine v3.0 921
AutoFact: peptide alpha-N-acetyltransferase [Arabidopsis thaliana] dbj|BAB10599.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96745.1| Unknown protein [Arabidopsis thaliana] gb|AAL47392.1| unknown protein [Arabidopsis thaliana] gb|AAM64579.1| silencing gr 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Silencing group B protein 1.628e-11
Putative Complete
sp_v3.0_unigene15066 SustainPine v3.0 1854
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene15357 SustainPine v3.0 324
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY5_RICCO 3.0e-26
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Sma3: Putative transcriptional regulator 3.114e-08
Internal
sp_v3.0_unigene15571 SustainPine v3.0 266
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 2.517e-07
N-terminus
sp_v3.0_unigene15839 SustainPine v3.0 1160
AutoFact: putative DEAD/DEAH box helicase [Arabidopsis thaliana] gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana] gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: CarD-like transcriptional regulator family protein, expressed 4.755e-09
Putative N-terminus
sp_v3.0_unigene15846 SustainPine v3.0 965
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 4.0e-13
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SNF2 family DNA-dependent ATPase 3.618e-06
N-terminus
sp_v3.0_unigene15851 SustainPine v3.0 631
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RL32_RICCO 0.0
FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
Sma3: ATP-dependent RNA helicase, putative 7.085e-09
Internal
sp_v3.0_unigene15866 SustainPine v3.0 683
AutoFact: ATP-dependent RNA helicase, putative 4.0e-29
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 5.366e-13
Putative N-terminus
sp_v3.0_unigene16343 SustainPine v3.0 889
AutoFact: Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain