Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene173381 SustainPine v3.0 520
• AutoFact: Gly_rich multi-domain protein 6.0e-19
• Sma3: Putative glycine rich protein 3.78e-18
coding
sp_v3.0_unigene183218 SustainPine v3.0 306
• AutoFact: MCM family protein [Dictyostelium discoideum AX4] gb|EAL65948.1| MCM family protein [Dictyostelium discoideum AX4] 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene183878 SustainPine v3.0 528
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHB6_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.841e-28
Complete
sp_v3.0_unigene184081 SustainPine v3.0 606
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene186069 SustainPine v3.0 556
• AutoFact: PREDICTED: similar to yeast ribosomal protein S28 homologue n=1 Tax=Monodelphis domestica RepID=UPI0000F2C5F5 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S23 8.439e-09
Complete
sp_v3.0_unigene186445 SustainPine v3.0 475
• AutoFact: 40S ribosomal protein S12 n=3 Tax=Tetrahymena thermophila RepID=RS12_TETTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Putative Complete
sp_v3.0_unigene186831 SustainPine v3.0 438
• AutoFact: Unassigned protein 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene188229 SustainPine v3.0 423
• AutoFact: Unassigned protein 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene188395 SustainPine v3.0 629
• AutoFact: Ribosomal protein S23 n=3 Tax=Chlorophyta RepID=A8IJQ4_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S23 0.0
Putative Complete
sp_v3.0_unigene188404 SustainPine v3.0 486
• AutoFact: 40S ribosomal protein S15 n=1 Tax=Camponotus floridanus RepID=E2APF5_9HYME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 9.608e-17
Complete
sp_v3.0_unigene188701 SustainPine v3.0 174
• AutoFact: elongation factor Ts family protein [Arabidopsis thaliana] emb|CAB43920.1| putative protein [Arabidopsis thaliana] emb|CAB79664.1| putative protein [Arabidopsis thaliana] gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana] gb|AEE85580.1| elongation 8.0e-20
• FL-Next: sp=Elongation factor Ts, chloroplastic; Rhodomonas salina (Cryptomonas salina). Plastid; Chloroplast. 0.0
• Sma3: Elongation factor Ts 2.52e-29
Internal
sp_v3.0_unigene188838 SustainPine v3.0 450
• AutoFact: 60S ribosomal subunit protein L8, putative n=4 Tax=Plasmodium RepID=B3L699_PLAKH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene188920 SustainPine v3.0 479
• AutoFact: ribosomal protein L [Argopecten irradians] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.743e-09
C-terminus
sp_v3.0_unigene188981 SustainPine v3.0 449
• AutoFact: 60S ribosomal protein L2, putative n=9 Tax=Trypanosomatidae RepID=D6XG49_TRYB2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene189060 SustainPine v3.0 681
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 5.0e-07
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Putative Complete
sp_v3.0_unigene189262 SustainPine v3.0 392
• AutoFact: 40S ribosomal protein S11 [Plasmodium vivax SaI-1] ref|XP_002258883.1| 40s ribosomal protein s11 [Plasmodium knowlesi strain H] gb|EDL44809.1| 40S ribosomal protein S11, putative [Plasmodium vivax] emb|CAQ39656.1| 40s ribosomal protein s11, putative [Plas 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.581e-28
C-terminus
sp_v3.0_unigene189341 SustainPine v3.0 377
• AutoFact: Ribosomal protein S3 n=4 Tax=Pinaceae RepID=D2DWH7_9CONI 1.0e-05
• FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
• Sma3: Ribosomal protein S3 3.125e-39
Internal
sp_v3.0_unigene189715 SustainPine v3.0 558
• AutoFact: Pectinesterase (Fragment) n=3 Tax=Vitis vinifera RepID=D7TIW5_VITVI 1.0e-35
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene189938 SustainPine v3.0 252
• AutoFact: GH15450 n=1 Tax=Drosophila grimshawi RepID=B4J2E2_DROGR 2.0e-21
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: eIF-5A-2 7.147e-16
Putative C-terminus
sp_v3.0_unigene190086 SustainPine v3.0 568
• AutoFact: Putative ribosomal protein S15 n=1 Tax=Barentsia elongata RepID=A8UAE5_9BILA 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 9.839e-17
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain