Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene165885 SustainPine v3.0 274
AutoFact: 40s ribosomal protein s23, putative n=8 Tax=Agaricomycotina RepID=Q5KDD6_CRYNJ 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 1.435e-10
Putative N-terminus
sp_v3.0_unigene166091 SustainPine v3.0 365
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 7.0e-40
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene166154 SustainPine v3.0 449
AutoFact: Cell cycle arrest protein BUB3 n=2 Tax=Arabidopsis RepID=Q9LJN8_ARATH 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mitotic checkpoint protein, putative 1.017e-12
C-terminus
sp_v3.0_unigene166365 SustainPine v3.0 242
AutoFact: putative DNA replication licensing factor [Arabidopsis thaliana] 1.0e-22
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Minichromosome maintenance protein 2.626e-10
Internal
sp_v3.0_unigene166435 SustainPine v3.0 462
AutoFact: 40s ribosomal protein s23, putative n=8 Tax=Agaricomycotina RepID=Q5KDD6_CRYNJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 1.975e-10
Putative Complete
sp_v3.0_unigene166743 SustainPine v3.0 258
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SU72_RICCO 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinase, putative 2.846e-10
N-terminus
sp_v3.0_unigene166798 SustainPine v3.0 358
AutoFact: DNA-directed RNA polymerase II subunit [Coprinopsis cinerea okayama7#130] gb|EAU91761.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea okayama7#130] 1.0e-29
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene166876 SustainPine v3.0 136
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene166954 SustainPine v3.0 232
AutoFact: 60S ribosomal protein L8 [Triatoma infestans] 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L2 1.571e-07
N-terminus
sp_v3.0_unigene167547 SustainPine v3.0 273
AutoFact: C. briggsae CBR-RPL-2 protein [Caenorhabditis briggsae] emb|CAP26039.1| CBR-RPL-2 protein [Caenorhabditis briggsae AF16] 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene167676 SustainPine v3.0 127
AutoFact: Unassigned protein
FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
Internal
sp_v3.0_unigene168042 SustainPine v3.0 130
AutoFact: Os07g0132500 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0D8S4_ORYSJ 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative receptor-type protein kinase LRK1 6.976e-27
Internal
sp_v3.0_unigene168159 SustainPine v3.0 144
AutoFact: asparaginyl-tRNA synthetase, putative [Brassica oleracea] 1.0e-16
FL-Next: sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Asparaginyl-tRNA synthetase, cytoplasmic 3 1.82e-07
Internal
sp_v3.0_unigene168181 SustainPine v3.0 281
AutoFact: ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana] gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thali 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene168224 SustainPine v3.0 262
AutoFact: Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL 7.0e-37
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 1.14e-31
Internal
sp_v3.0_unigene169019 SustainPine v3.0 271
AutoFact: Gly_rich multi-domain protein 7.0e-17
Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
AutoFact: GRP multi-domain protein 3.0e-16
Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene170036 SustainPine v3.0 237
AutoFact: GRP multi-domain protein 1.0e-10
Sma3: Putative glycine-rich protein 2.016e-08
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene172836 SustainPine v3.0 507
AutoFact: Gly_rich multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 1.685e-10
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain