Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene161858 SustainPine v3.0 328
• AutoFact: replication factor A1 [Arabidopsis thaliana] gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana] dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana] gb|AAO64881.1| At2g06510 [Arabidopsis thaliana] gb|AEC06010.1| replic 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene162502 SustainPine v3.0 340
• AutoFact: Suppressor of ty, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SEX9_RICCO 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: Global transcription factor group 1.186e-07
Internal
sp_v3.0_unigene162673 SustainPine v3.0 452
• AutoFact: DNA ligase n=1 Tax=Sorghum bicolor RepID=C5WXG6_SORBI 3.0e-23
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
• Sma3: DNA ligase 8.098e-11
Internal
sp_v3.0_unigene162843 SustainPine v3.0 464
• AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.716e-16
Internal
sp_v3.0_unigene162871 SustainPine v3.0 218
• AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 3.0e-15
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene163289 SustainPine v3.0 162
• AutoFact: transcription elongation factor SPT6 [Arabidopsis thaliana] gb|AEE34374.1| transcription elongation factor SPT6 [Arabidopsis thaliana] 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Global transcription factor group 3.314e-10
Internal
sp_v3.0_unigene163408 SustainPine v3.0 407
• AutoFact: ATP-dependent RNA helicase (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GBQ6_CUCME 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.112e-31
Internal
sp_v3.0_unigene163507 SustainPine v3.0 382
• AutoFact: translation initiation factor eIF-1A [Babesia bovis T2Bo] gb|EDO08707.1| translation initiation factor eIF-1A, putative [Babesia bovis] 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 2.907e-19
N-terminus
sp_v3.0_unigene163650 SustainPine v3.0 435
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OB-fold nucleic acid binding domain containing protein 4.674e-15
Putative N-terminus
sp_v3.0_unigene164252 SustainPine v3.0 294
• AutoFact: DNA ligase n=1 Tax=Ricinus communis RepID=B9SPY8_RICCO 1.0e-14
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Internal
sp_v3.0_unigene164320 SustainPine v3.0 344
• AutoFact: Os08g0323600 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6Z0E3_ORYSJ 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene164360 SustainPine v3.0 413
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM28_MARPO 2.0e-33
• FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 8.489e-26
Internal
sp_v3.0_unigene164743 SustainPine v3.0 134
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHB6_PHYIT 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 6.676e-32
Internal
sp_v3.0_unigene165111 SustainPine v3.0 134
• AutoFact: DNA replication licensing factor mcm5 [Cryptosporidium hominis TU502] gb|EAL36732.1| DNA replication licensing factor mcm5 [Cryptosporidium hominis] 2.0e-10
• FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MCM2-related protein 1.939e-07
Internal
sp_v3.0_unigene165161 SustainPine v3.0 161
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene165394 SustainPine v3.0 380
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Postia placenta Mad-698-R RepID=B8P8P5_POSPM 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 9.47e-32
C-terminus
sp_v3.0_unigene165638 SustainPine v3.0 274
• AutoFact: Eukaryotic translation initiation factor 5A-2 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NJF7_COPC7 4.0e-28
• FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 4.36e-18
C-terminus
sp_v3.0_unigene165694 SustainPine v3.0 441
• AutoFact: 40S ribosomal protein S23 n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SG30_PARBP 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
C-terminus
sp_v3.0_unigene165749 SustainPine v3.0 178
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAM15519.1| Expressed protein [Arabidopsis thaliana] gb|AAM64686.1| unknown [Arabidopsis thaliana] gb|AAM96981.1| expressed protein [Arabidopsis thaliana] gb|AAN15742.1| expr 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OB-fold nucleic acid binding domain containing protein 9.104e-12
C-terminus
sp_v3.0_unigene165879 SustainPine v3.0 433
• AutoFact: 40s ribosomal protein s23, putative n=8 Tax=Agaricomycotina RepID=Q5KDD6_CRYNJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain