Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene158753 SustainPine v3.0 203
• AutoFact: translation initiation factor IF-2 [Plasmodium vivax SaI-1] gb|EDL46367.1| translation initiation factor IF-2, putative [Plasmodium vivax] 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene158844 SustainPine v3.0 428
• AutoFact: 40S ribosomal protein S23 n=55 Tax=Eukaryota RepID=RS23_DROME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Putative Complete
sp_v3.0_unigene159009 SustainPine v3.0 525
• AutoFact: 60S ribosomal protein L8 n=5 Tax=Neoptera RepID=E2A9Y1_9HYME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 3.068e-08
N-terminus
sp_v3.0_unigene159133 SustainPine v3.0 384
• AutoFact: Eukaryotic translation initiation factor eIF-5A n=2 Tax=Metarhizium RepID=E9EFI4_METAQ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 5.911e-28
N-terminus
sp_v3.0_unigene159148 SustainPine v3.0 414
• AutoFact: Lysyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=A2Q1N3_MEDTR 5.0e-39
• FL-Next: sp=Lysine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Lysyl-tRNA synthetase 5.60519e-45
Internal
sp_v3.0_unigene159176 SustainPine v3.0 178
• AutoFact: 40S ribosomal protein S23 n=1 Tax=Salmo salar RepID=C0H7K2_SALSA 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.435e-10
Internal
sp_v3.0_unigene159216 SustainPine v3.0 362
• AutoFact: aspartyl-tRNA synthetase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB108 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aspartyl-tRNA synthetase 1.382e-07
Internal
sp_v3.0_unigene159338 SustainPine v3.0 397
• AutoFact: Ribosomal protein L8 n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UHR9_9EUKA 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 5.817e-09
C-terminus
sp_v3.0_unigene159484 SustainPine v3.0 369
• AutoFact: Ribosomal protein S28 n=3 Tax=Giardia intestinalis RepID=A8B4F3_GIAIC 7.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S28e 6.686e-09
Complete
sp_v3.0_unigene159507 SustainPine v3.0 141
• AutoFact: putative RNA helicase [Oryza sativa Japonica Group] 3.0e-05
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene159557 SustainPine v3.0 471
• AutoFact: ribosomal protein L2-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L2 1.501e-07
N-terminus
sp_v3.0_unigene159577 SustainPine v3.0 479
• AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.361e-18
Internal
sp_v3.0_unigene159804 SustainPine v3.0 358
• AutoFact: Protection of telomeres 1 protein n=1 Tax=Pinus taeda RepID=B7T1K4_PINTA 9.99995e-41
• FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
C-terminus
sp_v3.0_unigene160246 SustainPine v3.0 489
• AutoFact: 40s ribosomal protein s23, putative n=8 Tax=Agaricomycotina RepID=Q5KDD6_CRYNJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene160837 SustainPine v3.0 432
• AutoFact: kinesin-related protein [Gossypium hirsutum] 1.0e-38
• FL-Next: sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Kinesin heavy chain, putative 3.552e-12
Internal
sp_v3.0_unigene160931 SustainPine v3.0 483
• AutoFact: Protection of telomeres 1 protein n=1 Tax=Pinus taeda RepID=B7T1K4_PINTA 0.0
• FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
• Sma3: Protection of telomeres 1 protein 4.702e-10
N-terminus
sp_v3.0_unigene161013 SustainPine v3.0 365
• AutoFact: 40S ribosomal protein rpS11e n=2 Tax=Tetrahymena thermophila RepID=E6PBS9_TETTH 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 2.731e-24
N-terminus
sp_v3.0_unigene161301 SustainPine v3.0 347
• AutoFact: Global transcription factor group n=2 Tax=Populus trichocarpa RepID=B9HDT6_POPTR 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene161400 SustainPine v3.0 381
• AutoFact: putative translation initiation factor IF-2 [Arabidopsis thaliana] 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative translation initiation factor IF-2 1.679e-14
Putative N-terminus
sp_v3.0_unigene161436 SustainPine v3.0 480
• AutoFact: Probable HYP2-translation initiation factor eIF5A.1 n=2 Tax=Ustilaginaceae RepID=E6ZVD8_9BASI 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 6.811e-28
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain