Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene157106 SustainPine v3.0 344
• AutoFact: PREDICTED: similar to yeast ribosomal protein S28 homologue n=1 Tax=Monodelphis domestica RepID=UPI0000F2C5F5 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Putative C-terminus
sp_v3.0_unigene157341 SustainPine v3.0 351
• AutoFact: Ribosomal protein L8 n=2 Tax=Chlamydomonadales RepID=A8IVK1_CHLRE 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.695e-08
Internal
sp_v3.0_unigene157418 SustainPine v3.0 317
• AutoFact: Lysyl-tRNA synthetase n=1 Tax=Tribolium castaneum RepID=D6WMI1_TRICA 1.0e-36
• FL-Next: sp=Lysine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Lysyl-tRNA synthetase 0.0
Putative C-terminus
sp_v3.0_unigene157452 SustainPine v3.0 391
• AutoFact: Putative ribosomal protein S15 (Fragment) n=1 Tax=Mucor racemosus RepID=A8W7H0_RHIRA 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 9.839e-17
N-terminus
sp_v3.0_unigene157561 SustainPine v3.0 228
• AutoFact: Putative ribosomal protein S15 n=1 Tax=Maconellicoccus hirsutus RepID=A2I418_MACHI 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 6.633e-17
Internal
sp_v3.0_unigene157833 SustainPine v3.0 213
• AutoFact: 60S ribosomal protein L8, putative n=4 Tax=Schistosoma RepID=C4QB62_SCHMA 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L2 1.661e-07
N-terminus
sp_v3.0_unigene158020 SustainPine v3.0 406
• AutoFact: 60S ribosomal protein L8 n=1 Tax=Lepeophtheirus salmonis RepID=D3PIQ3_9MAXI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.349e-09
Putative C-terminus
sp_v3.0_unigene158079 SustainPine v3.0 269
• AutoFact: Proteasome subunit beta type n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CF12_9EUKA 7.0e-24
• FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit beta type-6 6.824e-08
N-terminus
sp_v3.0_unigene158090 SustainPine v3.0 429
• AutoFact: 40S ribosomal protein S11 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WDX6_9STRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.145e-20
N-terminus
sp_v3.0_unigene158126 SustainPine v3.0 310
• AutoFact: 40S ribosomal protein S15 n=16 Tax=Poaceae RepID=RS15_ORYSJ 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 8.11e-17
C-terminus
sp_v3.0_unigene158232 SustainPine v3.0 187
• AutoFact: PREDICTED: similar to MGC82596 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48192 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158267 SustainPine v3.0 447
• AutoFact: pfam01588, tRNA_bind, Putative tRNA binding domain 6.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable methionyl-tRNA synthetase 5.167e-09
Internal
sp_v3.0_unigene158316 SustainPine v3.0 117
• AutoFact: eIF5A n=2 Tax=Percomorpha RepID=C5HBN1_PAROL 7.0e-13
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 1.956e-28
Internal
sp_v3.0_unigene158376 SustainPine v3.0 232
• AutoFact: ribosomal protein L2 [Brassica juncea] 7.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.478e-08
Putative N-terminus
sp_v3.0_unigene158459 SustainPine v3.0 330
• AutoFact: DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 RepID=F0W6P2_9STRA 3.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA polymerase 1.909e-07
N-terminus
sp_v3.0_unigene158595 SustainPine v3.0 427
• AutoFact: Eukaryotic translation initiation factor 5A-1 n=3 Tax=Onygenales RepID=C4JVG1_UNCRE 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 6.601e-28
N-terminus
sp_v3.0_unigene158641 SustainPine v3.0 437
• AutoFact: RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2; AltName: Full=eIF-4D emb|CAA45104.1| eukaryotic initiation factor 5A (2) [Nicotiana plumbaginifolia] 1.0e-23
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 1.605e-24
C-terminus
sp_v3.0_unigene158649 SustainPine v3.0 382
• AutoFact: Proteasome subunit beta type 6 n=1 Tax=Dictyostelium fasciculatum RepID=F4Q3J1_9MYCE 8.0e-40
• FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit beta type-6 9.004e-08
N-terminus
sp_v3.0_unigene158689 SustainPine v3.0 405
• AutoFact: Cold shock protein (Beta-ribbon, CspA family) n=1 Tax=Pseudomonas fluorescens WH6 RepID=E2XMQ1_PSEFL 5.0e-27
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
N-terminus
sp_v3.0_unigene158732 SustainPine v3.0 403
• AutoFact: Ribosomal Proteins L2 domain-containing protein n=6 Tax=Fungi/Metazoa group RepID=E3Q2Y0_COLGM 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.922e-08
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain