Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene155502 SustainPine v3.0 563
• AutoFact: 40S ribosomal protein S11 [Cyanophora paradoxa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.333e-28
Complete
sp_v3.0_unigene155537 SustainPine v3.0 447
• AutoFact: 40S ribosomal protein S15 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7G4_PHYIT 1.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 8.727e-17
C-terminus
sp_v3.0_unigene155566 SustainPine v3.0 306
• AutoFact: Translation initiation factor IF-1 n=9 Tax=Actinobacteria (class) RepID=IF1_NOCSJ 6.0e-32
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: Translation initiation factor IF-1, chloroplastic 0.0
Complete
sp_v3.0_unigene155842 SustainPine v3.0 444
• AutoFact: 40S ribosomal protein S15 n=1 Tax=Camponotus floridanus RepID=E2APF5_9HYME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 1.056e-16
Putative Complete
sp_v3.0_unigene155866 SustainPine v3.0 483
• AutoFact: 40S ribosomal protein S12 n=3 Tax=Tetrahymena thermophila RepID=RS12_TETTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Putative Complete
sp_v3.0_unigene156061 SustainPine v3.0 234
• AutoFact: ATP synthase subunit alpha n=2 Tax=Polaribacter RepID=A2TYK2_9FLAO 8.0e-35
• FL-Next: sp=ATP synthase subunit alpha, chloroplastic; Agathis australis (Kauri) (Dammara australis). Plastid; Chloroplast. 0.0
• Sma3: F-ATPase subunit alpha 0.0
Internal
sp_v3.0_unigene156083 SustainPine v3.0 263
• AutoFact: 40S ribosomal protein S11, putative n=5 Tax=Eukaryota RepID=C9ZIN6_TRYB9 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.361e-32
C-terminus
sp_v3.0_unigene156176 SustainPine v3.0 414
• AutoFact: Aspartate-trna ligase n=1 Tax=Thalassiosira pseudonana RepID=B8BRC4_THAPS 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative aspartate-tRNA ligase 9.31e-08
C-terminus
sp_v3.0_unigene156214 SustainPine v3.0 495
• AutoFact: Initiation factor 5a n=1 Tax=Flammulina velutipes RepID=D2JY86_FLAVE 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 5.911e-28
N-terminus
sp_v3.0_unigene156242 SustainPine v3.0 484
• AutoFact: 40S ribosomal protein S23 n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SG30_PARBP 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
C-terminus
sp_v3.0_unigene156483 SustainPine v3.0 419
• AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene156503 SustainPine v3.0 335
• AutoFact: Ribosomal protein L8 n=6 Tax=Polyphaga RepID=D1M824_9CUCU 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 1.928e-08
Internal
sp_v3.0_unigene156508 SustainPine v3.0 294
• AutoFact: DEAD/DEAH box helicase n=1 Tax=Polysphondylium pallidum RepID=D3B6F6_POLPA 9.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pre-mRNA splicing factor RNA helicase 8.172e-09
Internal
sp_v3.0_unigene156556 SustainPine v3.0 320
• AutoFact: Ribosomal protein L8 n=6 Tax=Polyphaga RepID=D1M824_9CUCU 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.505e-08
Internal
sp_v3.0_unigene156623 SustainPine v3.0 350
• AutoFact: KLTH0C07810p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DEB4_LACTC 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.286e-35
C-terminus
sp_v3.0_unigene156634 SustainPine v3.0 335
• AutoFact: Proteasome subunit beta type n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CF12_9EUKA 1.0e-33
• FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit beta type-6 9.054e-08
N-terminus
sp_v3.0_unigene156655 SustainPine v3.0 394
• AutoFact: Translation initiation factor IF-1 1 n=28 Tax=Actinomycetales RepID=IF11_STRAW 2.0e-23
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
• Sma3: Translation initiation factor IF-1, chloroplastic 8.492e-21
Putative Complete
sp_v3.0_unigene156956 SustainPine v3.0 394
• AutoFact: 40s ribosomal protein S15, putative n=1 Tax=Paramecium tetraurelia RepID=Q6BFE0_PARTE 6.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 2.026e-10
Putative N-terminus
sp_v3.0_unigene156973 SustainPine v3.0 365
• AutoFact: methionyl-tRNA synthetase-like protein (ISS) [Ostreococcus tauri] emb|CAL55424.1| methionyl-tRNA synthetase-like protein (ISS) [Ostreococcus tauri] 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene157045 SustainPine v3.0 299
• AutoFact: Proteasome subunit beta type n=1 Tax=Naegleria gruberi RepID=D2UXF6_NAEGR 1.0e-28
• FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit beta type-6 8.406e-08
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain