Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene154743 SustainPine v3.0 340
• AutoFact: 40s ribosomal protein S15, putative n=1 Tax=Paramecium tetraurelia RepID=Q6BFE0_PARTE 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 1.327e-16
C-terminus
sp_v3.0_unigene154777 SustainPine v3.0 369
• AutoFact: Small subunit ribosomal protein 28 n=35 Tax=Chromadorea RepID=A6YNJ5_PRIPA 8.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S28e 7.226e-13
Complete
sp_v3.0_unigene154791 SustainPine v3.0 247
• AutoFact: Eukaryotic translation initiation factor 5A-1 n=20 Tax=Saccharomycetaceae RepID=IF5A1_YEAST 1.0e-21
• FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: eIF-5A-2 4.017e-16
Putative C-terminus
sp_v3.0_unigene154810 SustainPine v3.0 384
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHB6_PHYIT 6.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.14e-35
C-terminus
sp_v3.0_unigene154813 SustainPine v3.0 363
• AutoFact: PREDICTED: similar to ribosomal protein L8 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000585096 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.807e-08
N-terminus
sp_v3.0_unigene154878 SustainPine v3.0 447
• AutoFact: Translation initiation factor 5A n=1 Tax=Glossina morsitans morsitans RepID=D3TMH0_GLOMM 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 4.491e-28
N-terminus
sp_v3.0_unigene154949 SustainPine v3.0 425
• AutoFact: Eukaryotic translation initiation factor eIF-5A n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D4L5_NEOFI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 6.811e-28
N-terminus
sp_v3.0_unigene155025 SustainPine v3.0 405
• AutoFact: PREDICTED: similar to Ribosomal protein L8 [Ornithorhynchus anatinus] 9.00054e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.349e-09
C-terminus
sp_v3.0_unigene155069 SustainPine v3.0 145
• AutoFact: Eukaryotic translation initiation factor eIF-5A n=4 Tax=Trichocomaceae RepID=B6QKQ7_PENMQ 3.0e-10
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
Internal
sp_v3.0_unigene155094 SustainPine v3.0 575
• AutoFact: Preprotein translocase subunit secY n=4 Tax=Oxalobacteraceae RepID=A4G9R8_HERAR 0.0
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
Complete
sp_v3.0_unigene155171 SustainPine v3.0 238
• AutoFact: Ribosomal protein rps15 n=1 Tax=Lineus viridis RepID=B0Z9Q6_9BILA 6.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 8.312e-17
C-terminus
sp_v3.0_unigene155176 SustainPine v3.0 432
• AutoFact: Asparaginyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus RepID=D7FLN1_ECTSI 8.0e-35
• FL-Next: sp=Asparagine--tRNA ligase, cytoplasmic 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Asparaginyl-tRNA synthetase, cytoplasmic 3 1.915e-07
Internal
sp_v3.0_unigene155204 SustainPine v3.0 494
• AutoFact: PREDICTED: ribosomal protein L8-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBCFE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.425e-08
Internal
sp_v3.0_unigene155238 SustainPine v3.0 425
• AutoFact: PREDICTED: similar to ribosomal protein S11-2 isoform 1 [Tribolium castaneum] 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.14e-35
C-terminus
sp_v3.0_unigene155322 SustainPine v3.0 448
• AutoFact: ATP dependent DNA helicase, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=E6QYZ7_CRYGW 2.0e-29
• FL-Next: sp=DNA replication licensing factor MCM3 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene155336 SustainPine v3.0 439
• AutoFact: Translation initiation factor eIF-5A family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23BQ5_TETTH 5.99756e-43
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 7.476e-28
N-terminus
sp_v3.0_unigene155351 SustainPine v3.0 273
• AutoFact: eukaryotic translation initiation factor 1A, Y-chromosomal [Aspergillus oryzae RIB40] ref|XP_002380951.1| eukaryotic translation initiation factor eIF-1A subunit, putative [Aspergillus flavus NRRL3357] dbj|BAE62760.1| unnamed protein product [Aspergillus 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 3.644e-11
N-terminus
sp_v3.0_unigene155411 SustainPine v3.0 292
• AutoFact: Ribosomal protein l n=1 Tax=Haliotis discus discus RepID=B6RB82_HALDI 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.613e-08
Putative N-terminus
sp_v3.0_unigene155432 SustainPine v3.0 303
• AutoFact: 40S ribosomal protein S11, putative n=4 Tax=Chromadorea RepID=A8PT63_BRUMA 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 3.336e-24
Internal
sp_v3.0_unigene155459 SustainPine v3.0 471
• AutoFact: Ribosomal protein S11 n=2 Tax=Chlamydomonadales RepID=A8JHC3_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S11, component of cytosolic 80S ribosome and 40S small subunit 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain