Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene153406 SustainPine v3.0 226
• AutoFact: Protein component of the small (40S) ribosomal subunit n=1 Tax=Pichia angusta DL-1 RepID=E7R2M9_PICAD 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.009e-35
Putative C-terminus
sp_v3.0_unigene153440 SustainPine v3.0 530
• AutoFact: 40S ribosomal protein S23 n=1 Tax=Trichinella spiralis RepID=E5S4A3_TRISP 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S23e 0.0
Complete
sp_v3.0_unigene153486 SustainPine v3.0 440
• AutoFact: 40s ribosomal protein s15, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=Q5KEX8_CRYNJ 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 2.042e-13
N-terminus
sp_v3.0_unigene153507 SustainPine v3.0 399
• AutoFact: Eukaryotic translation initiation factor 5A n=1 Tax=Dianthus caryophyllus RepID=IF5A_DIACA 7.0e-39
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 6.397e-28
N-terminus
sp_v3.0_unigene153669 SustainPine v3.0 263
• AutoFact: 40S ribosomal protein S11 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WDX6_9STRA 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S11, component of cytosolic 80S ribosome and 40S small subunit 5.361e-06
Putative N-terminus
sp_v3.0_unigene153695 SustainPine v3.0 302
• AutoFact: Proteasome subunit beta type-6 n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2U198_9EUKA 1.0e-23
• FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit beta type-6 4.578e-08
Putative C-terminus
sp_v3.0_unigene153817 SustainPine v3.0 116
• AutoFact: 40S ribosomal protein S11, putative n=6 Tax=Plasmodium RepID=A5K7Q0_PLAVS 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.999e-32
Internal
sp_v3.0_unigene153852 SustainPine v3.0 504
• AutoFact: Ribosomal protein S15 (Fragment) n=2 Tax=Mollusca RepID=Q8ITA6_AEQIR 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 1.031e-16
Putative Complete
sp_v3.0_unigene153975 SustainPine v3.0 379
• AutoFact: Bacterial translation initiation factor 1 (BIF-1) n=2 Tax=Bacteroidetes RepID=F2II62_FLUTR 2.0e-28
• FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: Translation initiation factor IF-1, chloroplastic 0.0
Complete
sp_v3.0_unigene154126 SustainPine v3.0 357
• AutoFact: C. briggsae CBR-RPL-2 protein [Caenorhabditis briggsae] emb|CAP26039.1| CBR-RPL-2 protein [Caenorhabditis briggsae AF16] 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene154149 SustainPine v3.0 376
• AutoFact: RS11, ribosomal protein 11 40S small ribosomal subunit n=1 Tax=Thalassiosira pseudonana RepID=B8C1P3_THAPS 4.06377e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.286e-35
C-terminus
sp_v3.0_unigene154182 SustainPine v3.0 377
• AutoFact: OJ1717_A09.34 gene product (ISS) [Ostreococcus tauri] emb|CAL55879.1| OJ1717_A09.34 gene product (ISS) [Ostreococcus tauri] 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative aspartate-tRNA ligase 8.702e-08
Internal
sp_v3.0_unigene154194 SustainPine v3.0 491
• AutoFact: 40S ribosomal protein S11 [Ajellomyces capsulatus NAm1] gb|EDN11320.1| 40S ribosomal protein S11 [Ajellomyces capsulatus NAm1] gb|EEH03314.1| 40S ribosomal protein S11 [Ajellomyces capsulatus G186AR] gb|EGC42757.1| 40S ribosomal protein S11 [Ajellomyces c 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 5.401e-28
N-terminus
sp_v3.0_unigene154295 SustainPine v3.0 196
• AutoFact: PREDICTED: similar to yeast ribosomal protein S28 homologue [Strongylocentrotus purpuratus] ref|XP_001182865.1| PREDICTED: similar to yeast ribosomal protein S28 homologue [Strongylocentrotus purpuratus] 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene154297 SustainPine v3.0 333
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RV22_PHYPA 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene154340 SustainPine v3.0 456
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] sp|O49453.1|Y4844_ARATH RecName: Full=Uncharacterized protein At4g28440 emb|CAA16883.1| putative protein [Arabidopsis thaliana] emb|CAB79646.1| putative protein [Arabidopsis tha 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OB-fold nucleic acid binding domain containing protein 4.574e-15
Putative Complete
sp_v3.0_unigene154349 SustainPine v3.0 327
• AutoFact: Eukaryotic translation initiation factor 5A-1 n=20 Tax=Saccharomycetaceae RepID=IF5A1_YEAST 4.0e-21
• FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 2 8.982e-10
C-terminus
sp_v3.0_unigene154459 SustainPine v3.0 350
• AutoFact: 50S ribosomal protein L2 n=2 Tax=Asticcacaulis RepID=E8RLL2_9CAUL 2.0e-11
• FL-Next: sp=50S ribosomal protein L2, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein L2 1.505e-07
C-terminus
sp_v3.0_unigene154570 SustainPine v3.0 374
• AutoFact: Eukaryotic translation initiation factor 1A, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NI73_PHYIT 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 1A 3.52e-15
C-terminus
sp_v3.0_unigene154741 SustainPine v3.0 200
• AutoFact: Zinc knuckle domain protein n=1 Tax=Metarhizium anisopliae ARSEF 23 RepID=E9ER74_METAR 5.0e-08
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain