Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene78016 SustainPine v3.0 286
AutoFact: Chloroplast ribosomal protein S1 (Fragment) n=1 Tax=Cucumis sativus RepID=A1BQM4_CUCSA 6.0e-20
FL-Next: sp=30S ribosomal protein S1, chloroplastic; Spinacia oleracea (Spinach). 0.0
Sma3: 30S ribosomal protein S1, chloroplast, putative, expressed 4.688e-09
Internal
sp_v3.0_unigene78067 SustainPine v3.0 344
AutoFact: Pectinesterase-3, putative n=1 Tax=Ricinus communis RepID=B9RH55_RICCO 3.0e-38
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene78676 SustainPine v3.0 248
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SU72_RICCO 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinase, putative 1.026e-11
N-terminus
sp_v3.0_unigene79024 SustainPine v3.0 388
AutoFact: 37S ribosomal protein S12 n=2 Tax=Metarhizium RepID=E9E299_METAQ 1.0e-35
FL-Next: sp=Ribosomal protein S12, mitochondrial; Pinus sylvestris (Scots pine). Mitochondrion. 0.0
Sma3: Ribosomal protein S12 0.0
C-terminus
sp_v3.0_unigene79283 SustainPine v3.0 308
AutoFact: PREDICTED: ribosomal protein L8-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBCFE 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L8 7.824e-09
Internal
sp_v3.0_unigene79377 SustainPine v3.0 304
AutoFact: Pectinesterase n=1 Tax=Sorghum bicolor RepID=C5YIK0_SORBI 2.0e-16
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 5.199e-12
Internal
sp_v3.0_unigene79432 SustainPine v3.0 289
AutoFact: Ribosomal protein S11, component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RYN3_OSTLU 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S11 6.028e-21
N-terminus
sp_v3.0_unigene79588 SustainPine v3.0 372
AutoFact: 40S ribosomal protein S17 n=2 Tax=Pucciniales RepID=E3K2S4_PUCGT 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S11 2.109e-24
N-terminus
sp_v3.0_unigene80317 SustainPine v3.0 205
AutoFact: polynucleotide phosphorylase [Pisum sativum] 1.0e-12
FL-Next: tr=Putative uncharacterized protein Sb02g003900; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: Putative polynucleotide phosphorylase 1.439e-08
Internal
sp_v3.0_unigene80380 SustainPine v3.0 187
AutoFact: ATP synthase gamma chain (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QJZ7_IXOSC 5.0e-17
FL-Next: sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP synthase gamma chain 0.0
C-terminus
sp_v3.0_unigene80398 SustainPine v3.0 288
AutoFact: DUF707 domain containing protein 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative lysine ketoglutarate reductase trans-splicing related 1 2.616e-08
Internal
sp_v3.0_unigene80496 SustainPine v3.0 263
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 2.851e-07
Internal
sp_v3.0_unigene80782 SustainPine v3.0 256
AutoFact: DUF707 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lysine ketoglutarate reductase trans-splicing related 1 5.114e-19
Internal
sp_v3.0_unigene80950 SustainPine v3.0 239
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative receptor-type protein kinase LRK1 4.358e-27
Internal
sp_v3.0_unigene81091 SustainPine v3.0 158
AutoFact: Similar to Kinesin proteins [Arabidopsis thaliana] 7.0e-16
FL-Next: sp=Kinesin-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Kinesin, putative 1.078e-12
Internal
sp_v3.0_unigene81338 SustainPine v3.0 158
AutoFact: Ribosomal protein rps23 (Fragment) n=2 Tax=Glycera tridactyla RepID=F1DB68_9ANNE 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene81444 SustainPine v3.0 243
AutoFact: OB-fold nucleic acid binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q93VB0_ARATH 7.0e-28
FL-Next: sp=Probable methionine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene81530 SustainPine v3.0 179
AutoFact: ATP-dependent RNA helicase, putative-related [Oryza sativa Japonica Group] gb|AAX96100.1| Similar to ATP-dependent RNA helicase, putative [Oryza sativa Japonica Group] 2.0e-20
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 7.699e-24
Internal
sp_v3.0_unigene81638 SustainPine v3.0 142
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene85135 SustainPine v3.0 289
AutoFact: GRP multi-domain protein 9.0e-10
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain