Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene66779 SustainPine v3.0 309
AutoFact: Unassigned protein
FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
Sma3: Protection of telomeres 1 protein 1.283e-14
Internal
sp_v3.0_unigene66942 SustainPine v3.0 379
AutoFact: Putative 40S ribosomal protein S28 isoform 2 n=1 Tax=Spadella cephaloptera RepID=A8E6D0_9BILA 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S28e 9.483e-13
Complete
sp_v3.0_unigene67191 SustainPine v3.0 382
AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene67247 SustainPine v3.0 301
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene67376 SustainPine v3.0 418
AutoFact: Aspartyl-tRNA synthetase n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=D5UNK7_TSUPD 0.0
FL-Next: sp=Lysine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative aspartate--tRNA ligase 1.385e-08
Internal
sp_v3.0_unigene67756 SustainPine v3.0 272
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene68583 SustainPine v3.0 311
AutoFact: Putative 40S ribosomal protein n=1 Tax=Zea mays RepID=Q8H6J0_MAIZE 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 2.507e-07
C-terminus
sp_v3.0_unigene68690 SustainPine v3.0 219
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 8.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S28e 7.041e-13
N-terminus
sp_v3.0_unigene68778 SustainPine v3.0 227
AutoFact: CST complex subunit STN1 [Arabidopsis thaliana] sp|Q9LMK5.1|STN1_ARATH RecName: Full=CST complex subunit STN1; AltName: Full=Suppressor of cdc thirteen homolog; Short=AtSTN1 gb|AAF82208.1|AC067971_16 F10K1.17 [Arabidopsis thaliana] gb|AAM63429.1| unknown 7.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene70092 SustainPine v3.0 446
AutoFact: Elongation factor EF-P n=2 Tax=Arabidopsis RepID=Q8VZW6_ARATH 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene71151 SustainPine v3.0 179
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene71658 SustainPine v3.0 191
AutoFact: Lysyl-tRNA synthetase n=2 Tax=Arabidopsis RepID=Q9LJE2_ARATH 7.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lysyl-tRNA synthetase 1.563e-10
Putative Complete
sp_v3.0_unigene71778 SustainPine v3.0 340
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S28 ribosomal protein 0.0
Putative Complete
sp_v3.0_unigene71783 SustainPine v3.0 139
AutoFact: Unassigned protein 6.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene71792 SustainPine v3.0 230
AutoFact: Eukaryotic translation initiation factor 1A n=8 Tax=Spermatophyta RepID=IF1A_ONOVI 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Eukaryotic translation initiation factor 1A 3.73e-15
Putative N-terminus
sp_v3.0_unigene71861 SustainPine v3.0 295
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 2.0e-28
FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Internal
sp_v3.0_unigene71966 SustainPine v3.0 347
AutoFact: Unassigned protein 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene73130 SustainPine v3.0 154
AutoFact: DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative n=3 Tax=Euphorbiaceae RepID=B9SWD9_RICCO 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene73181 SustainPine v3.0 286
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S28e 7.041e-13
Putative Complete
sp_v3.0_unigene73490 SustainPine v3.0 434
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain