Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene62032 SustainPine v3.0 300
AutoFact: T8F5.22 protein n=4 Tax=Arabidopsis thaliana RepID=O80815_ARATH 2.0e-36
FL-Next: tr=Putative uncharacterized protein OJ1579_G03.7; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Global transcription factor group 4.886e-10
N-terminus
sp_v3.0_unigene62061 SustainPine v3.0 240
AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 3.0e-28
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 5.004e-10
Internal
sp_v3.0_unigene62074 SustainPine v3.0 266
AutoFact: Transcription elongation factor SPT6 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RRH2_PHYPA 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene62444 SustainPine v3.0 248
AutoFact: DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR 2.0e-08
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene62696 SustainPine v3.0 297
AutoFact: Unassigned protein
FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
Internal
sp_v3.0_unigene62817 SustainPine v3.0 104
AutoFact: MCM domain containing protein 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Chromosome chr2 scaffold_97, whole genome shotgun sequence 2.658e-06
Internal
sp_v3.0_unigene62969 SustainPine v3.0 314
AutoFact: ribosomal protein L2 [Glycine max] 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 6.944e-28
Internal
sp_v3.0_unigene63508 SustainPine v3.0 180
AutoFact: Elongation factor Ts n=2 Tax=Andropogoneae RepID=C5X4S1_SORBI 2.0e-16
FL-Next: sp=Elongation factor Ts, chloroplastic; Galdieria sulphuraria (Red alga). Plastid; Chloroplast. 0.0
Sma3: Elongation factor Ts 4.608e-14
Internal
sp_v3.0_unigene63600 SustainPine v3.0 237
AutoFact: Putative kinesin heavy chain n=1 Tax=Arabidopsis thaliana RepID=O22260_ARATH 2.0e-19
FL-Next: sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Kinesin heavy chain, putative 2.825e-12
Internal
sp_v3.0_unigene64037 SustainPine v3.0 244
AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8SJP8_SELML 4.0e-28
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene64097 SustainPine v3.0 217
AutoFact: putative DNA replication licensing factor [Arabidopsis thaliana] 4.0e-24
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Sma3: Chromosome chr2 scaffold_97, whole genome shotgun sequence 5.954e-06
Internal
sp_v3.0_unigene64396 SustainPine v3.0 128
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene64884 SustainPine v3.0 151
AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 5.0e-11
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 5.912e-07
Internal
sp_v3.0_unigene65329 SustainPine v3.0 220
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Putative N-terminus
sp_v3.0_unigene65409 SustainPine v3.0 228
AutoFact: putative DNA replication licensing factor [Arabidopsis thaliana] 6.0e-17
FL-Next: sp=DNA replication licensing factor MCM3 homolog 1; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene65463 SustainPine v3.0 352
AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 1.4013e-45
FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Eukaryotic translation initiation factor 5A 3.678e-28
Internal
sp_v3.0_unigene65536 SustainPine v3.0 155
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 6.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L2 2.549e-08
Internal
sp_v3.0_unigene65558 SustainPine v3.0 301
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 7.9874e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L2 1.467e-07
Internal
sp_v3.0_unigene65747 SustainPine v3.0 178
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene66056 SustainPine v3.0 300
AutoFact: RPA 32kDa [Pisum sativum] 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain