Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene50159 SustainPine v3.0 311
• AutoFact: Drf_FH1 multi-domain protein 6.0e-28
• Sma3: Glycine-rich protein 2.257e-15
coding
sp_v3.0_unigene51208 SustainPine v3.0 343
• AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 4.99997e-41
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene51883 SustainPine v3.0 357
• AutoFact: Protection of telomeres 1 protein n=1 Tax=Pinus taeda RepID=B7T1K4_PINTA 0.0
• FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
• Sma3: Protection of telomeres 1 protein 4.702e-10
Internal
sp_v3.0_unigene52278 SustainPine v3.0 482
• AutoFact: Unassigned protein 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene52355 SustainPine v3.0 177
• AutoFact: Translation protein SH3-like n=1 Tax=Medicago truncatula RepID=Q2HRD6_MEDTR 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene52514 SustainPine v3.0 370
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 8.377e-36
N-terminus
sp_v3.0_unigene52646 SustainPine v3.0 278
• AutoFact: Kinesin-related protein n=1 Tax=Gossypium hirsutum RepID=A4GU96_GOSHI 6.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin heavy chain, putative 4.588e-17
Putative Complete
sp_v3.0_unigene52850 SustainPine v3.0 342
• AutoFact: Aspartyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9S7X4_RICCO 1.0e-31
• FL-Next: tr=Aspartyl-tRNA synthetase, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Putative aspartate--tRNA ligase 5.743e-09
Internal
sp_v3.0_unigene53049 SustainPine v3.0 390
• AutoFact: methionyl-tRNA synthetase [Arabidopsis thaliana] sp|Q9SVN5.1|SYM_ARATH RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS emb|CAB36842.1| methionyl-tRNA synthetase-like protein [Arabidopsis thaliana] emb|C 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable methionyl-tRNA synthetase 8.985e-09
Internal
sp_v3.0_unigene53220 SustainPine v3.0 104
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene53275 SustainPine v3.0 229
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 6.0e-31
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene53458 SustainPine v3.0 435
• AutoFact: receptor protein kinase [Pinus sylvestris] 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Flagellin-sensing 2-like protein 1.4013e-45
Internal
sp_v3.0_unigene53471 SustainPine v3.0 342
• AutoFact: ribosomal protein L2-like [Solanum tuberosum] 6.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene53610 SustainPine v3.0 399
• AutoFact: Phospholipase D n=3 Tax=Solanaceae RepID=Q9AWB7_SOLLC 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene53855 SustainPine v3.0 358
• AutoFact: armadillo repeat-containing kinesin-like protein 3 [Arabidopsis thaliana] sp|Q9FZ06.1|ARK3_ARATH RecName: Full=Armadillo repeat-containing kinesin-like protein 3; AltName: Full=Phosphatidic acid kinase gb|AAG08965.1|AF159052_1 kinesin-like protein [Arabid 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin heavy chain, putative 1.469e-16
Internal
sp_v3.0_unigene53898 SustainPine v3.0 270
• AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 4.343e-07
Putative N-terminus
sp_v3.0_unigene54163 SustainPine v3.0 155
• AutoFact: 50S ribosomal protein L2 n=1 Tax=Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 RepID=D7GJ32_PROFC 3.0e-15
• FL-Next: sp=50S ribosomal protein L2, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
Internal
sp_v3.0_unigene54869 SustainPine v3.0 368
• AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9SZT7_RICCO 1.00053e-42
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene55702 SustainPine v3.0 345
• AutoFact: Eukaryotic translation initiation factor 5A-2 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NJF7_COPC7 6.02558e-44
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 6.811e-28
N-terminus
sp_v3.0_unigene55968 SustainPine v3.0 184
• AutoFact: methionyl-tRNA synthetase [Arabidopsis thaliana] sp|Q9SVN5.1|SYM_ARATH RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS emb|CAB36842.1| methionyl-tRNA synthetase-like protein [Arabidopsis thaliana] emb|C 2.0e-15
• FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Probable methionyl-tRNA synthetase 8.261e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain