Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene40607 SustainPine v3.0 2393
• AutoFact: [J] COG0090 Ribosomal protein L2 4.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene41771 SustainPine v3.0 869
• AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene42276 SustainPine v3.0 1559
• AutoFact: Kinesin, putative n=1 Tax=Ricinus communis RepID=B9RXV1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin heavy chain, putative 1.16e-15
Complete
sp_v3.0_unigene42837 SustainPine v3.0 200
• AutoFact: Kinesin, putative n=1 Tax=Ricinus communis RepID=B9SS38_RICCO 6.0e-27
• FL-Next: sp=Kinesin-like protein FLA10; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Sma3: Kinesin-like protein 3.137e-22
Internal
sp_v3.0_unigene43280 SustainPine v3.0 303
• AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 1.4013e-45
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.495e-16
Internal
sp_v3.0_unigene43444 SustainPine v3.0 309
• AutoFact: kinesin-related protein [Gossypium hirsutum] 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin heavy chain, putative 2.919e-16
Internal
sp_v3.0_unigene44060 SustainPine v3.0 1281
• AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
• FL-Next: sp=DNA replication licensing factor MCM3 homolog 1; Zea mays (Maize). 0.0
Putative C-terminus
sp_v3.0_unigene44104 SustainPine v3.0 365
• AutoFact: Methionine-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RWD7_RICCO 1.0e-29
• FL-Next: sp=Probable methionine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable methionyl-tRNA synthetase 8.985e-09
N-terminus
sp_v3.0_unigene44257 SustainPine v3.0 576
• AutoFact: Drf_FH1 multi-domain protein 2.0e-21
• Sma3: Glycine-rich protein 2.503e-15
coding
sp_v3.0_unigene45112 SustainPine v3.0 596
• AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene45140 SustainPine v3.0 515
• AutoFact: Leucine-rich repeat receptor protein kinase EXS, putative n=1 Tax=Ricinus communis RepID=B9SM68_RICCO 4.00001e-40
• FL-Next: tr=Receptor protein kinase; Pinus sylvestris (Scots pine). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 1.308e-08
Internal
sp_v3.0_unigene45508 SustainPine v3.0 845
• AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene46471 SustainPine v3.0 282
• AutoFact: DEAD/DEAH box helicase [Dictyostelium discoideum AX4] sp|Q54MH3.1|DHX16_DICDI RecName: Full=Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; AltName: Full=DEAH-box protein 16 gb|EAL64503.1| DEAD/DEAH box helicase [Dictyostelium discoide 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.925e-21
N-terminus
sp_v3.0_unigene46550 SustainPine v3.0 249
• AutoFact: Unassigned protein 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene47270 SustainPine v3.0 143
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RMI9_RICCO 7.0e-07
• FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.304e-14
Internal
sp_v3.0_unigene47603 SustainPine v3.0 896
• AutoFact: Single-strand binding protein (ISS) [Ostreococcus tauri] emb|CAL50423.1| Single-strand binding protein (ISS) [Ostreococcus tauri] 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene48053 SustainPine v3.0 1071
• AutoFact: Transcription factor IIIC, subunit 5 [Arabidopsis thaliana] gb|AEE78539.1| Transcription factor IIIC, subunit 5 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: Chromosome chr5 scaffold_72, whole genome shotgun sequence 3.379e-06
Putative C-terminus
sp_v3.0_unigene49780 SustainPine v3.0 451
• AutoFact: Helicase, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C873_ARATH 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.349e-12
Internal
sp_v3.0_unigene49855 SustainPine v3.0 2875
• AutoFact: DNA replication licensing factor MCM3 homolog 2 [Zea mays] sp|Q9SX04.1|MCM32_MAIZE RecName: Full=DNA replication licensing factor MCM3 homolog 2; AltName: Full=Replication origin activator 2; Short=ROA-2 gb|AAD48086.1|AF073330_1 replication origin activat 0.0
• FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
• Sma3: Minichromosome maintenance protein 3 2.202e-08
Complete
sp_v3.0_unigene49946 SustainPine v3.0 278
• AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 2.0e-13
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain