Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene32293 SustainPine v3.0 1076
• AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene32418 SustainPine v3.0 845
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene32444 SustainPine v3.0 1088
• AutoFact: Eukaryotic translation initiation factor 5A 4 n=1 Tax=Picea abies RepID=Q3ZDK5_PICAB 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 4 0.0
Complete
sp_v3.0_unigene32448 SustainPine v3.0 750
• AutoFact: FAP multi-domain protein 9.0e-12
putative_coding
sp_v3.0_unigene32524 SustainPine v3.0 658
• AutoFact: DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Homo sapiens] ref|NP_663607.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Mus musculus] ref|NP_001128261.1| polymerase (RNA) II (DNA directed) polypeptide H [Rattus norvegicus] r 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene32575 SustainPine v3.0 557
• AutoFact: Eukaryotic translation initiation factor 5A-2 n=14 Tax=Magnoliophyta RepID=IF5A2_SOLLC 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 7.476e-28
Complete
sp_v3.0_unigene32906 SustainPine v3.0 508
• AutoFact: 40S ribosomal protein S15 n=1 Tax=Zea mays RepID=B6U476_MAIZE 0.0
• FL-Next: tr=40S ribosomal protein S15; Zea mays (Maize). 0.0
• Sma3: 40S ribosomal protein S15 6.3e-17
Complete
sp_v3.0_unigene33097 SustainPine v3.0 1069
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene33124 SustainPine v3.0 1015
• AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gb|AAS76692.1| At4g18590 [Arabidopsis thaliana] gb|AAS88756.1| At4g18590 [Arabidopsis thaliana] gb|AEE84064.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pollen-specific protein like 6.861e-15
Complete
sp_v3.0_unigene33150 SustainPine v3.0 613
• AutoFact: 40S ribosomal protein S23 n=1 Tax=Trichinella spiralis RepID=E5S4A3_TRISP 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.691e-10
Complete
sp_v3.0_unigene33231 SustainPine v3.0 587
• AutoFact: Eukaryotic translation initiation factor 5A n=8 Tax=Saccharomycetales RepID=IF5A_CANAL 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 4.641e-28
Complete
sp_v3.0_unigene33273 SustainPine v3.0 466
• AutoFact: RNA_pol_Rpb8 domain containing protein 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene33366 SustainPine v3.0 608
• AutoFact: 40S ribosomal protein S23 n=1 Tax=Trichinella spiralis RepID=E5S4A3_TRISP 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.691e-10
Complete
sp_v3.0_unigene33483 SustainPine v3.0 503
• AutoFact: 40S ribosomal protein S15 n=1 Tax=Zea mays RepID=B6U476_MAIZE 0.0
• FL-Next: tr=40S ribosomal protein S15; Zea mays (Maize). 0.0
• Sma3: 40S ribosomal protein S15 6.3e-17
Complete
sp_v3.0_unigene33548 SustainPine v3.0 574
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 2.731e-24
N-terminus
sp_v3.0_unigene33631 SustainPine v3.0 781
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene33642 SustainPine v3.0 659
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene34615 SustainPine v3.0 296
• AutoFact: NADH-ubiquinone oxidoreductase chain 3 (Fragment) n=1 Tax=Araucaria heterophylla RepID=Q7YF57_ARAHE 5.0e-16
• FL-Next: sp=NADH-ubiquinone oxidoreductase chain 3; Pinus sylvestris (Scots pine). Mitochondrion. 0.0
• Sma3: NADH-ubiquinone oxidoreductase chain 3 0.0
C-terminus
sp_v3.0_unigene34920 SustainPine v3.0 604
• AutoFact: 30S ribosomal protein S7, chloroplastic n=15 Tax=Pinaceae RepID=RR7_PINKO 0.0
• FL-Next: sp=30S ribosomal protein S7, chloroplastic; Pinus arizonica. Plastid; Chloroplast. 0.0
• Sma3: 30S ribosomal protein S7, chloroplastic 2.297e-19
N-terminus
sp_v3.0_unigene35159 SustainPine v3.0 1742
• AutoFact: monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] sp|Q9LK94.1|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 dbj|BAB02528.1| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Monodehydroascorbate reductase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain