Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Single-stranded nucleic acid binding R3H

Term: IPR001374  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene269 SustainPine v3.0 725
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SDJ7_RICCO 0.0
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 3.148e-11
Internal
sp_v3.0_unigene446 SustainPine v3.0 2737
AutoFact: R3h domain containing protein, putative n=1 Tax=Ricinus communis RepID=B9SG72_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1373 SustainPine v3.0 1961
AutoFact: putative RNA helicase A [Arabidopsis thaliana] 6.0e-32
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
C-terminus
sp_v3.0_unigene1552 SustainPine v3.0 675
AutoFact: Unassigned protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene1911 SustainPine v3.0 2927
AutoFact: Keratin_B2 multi-domain protein 1.0e-05
FL-Next: sp=NF-X1-type zinc finger protein NFXL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene3177 SustainPine v3.0 1741
AutoFact: Putative ATP-dependent RNA helicase n=1 Tax=Oryza sativa RepID=Q9FW67_ORYSA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 7.555e-16
Putative Complete
sp_v3.0_unigene3493 SustainPine v3.0 3365
AutoFact: Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RUB7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 3.08286e-44
Complete
sp_v3.0_unigene4300 SustainPine v3.0 1485
AutoFact: putative potassium transporter [Oryza sativa Japonica Group] gb|EAZ05084.1| hypothetical protein OsI_27274 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 1.822e-30
Complete
sp_v3.0_unigene4621 SustainPine v3.0 752
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein ycf45; Porphyra purpurea. Plastid; Chloroplast. 0.0
Sma3: Uncharacterized protein ycf45 4.794e-12
Putative N-terminus
sp_v3.0_unigene4743 SustainPine v3.0 551
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 3.955e-16
Putative N-terminus
sp_v3.0_unigene5662 SustainPine v3.0 2726
AutoFact: K+ uptake permease 10 [Arabidopsis thaliana] sp|Q9SA05.2|POT10_ARATH RecName: Full=Potassium transporter 10; Short=AtPOT10 dbj|BAF01077.1| putative potassium transporter [Arabidopsis thaliana] gb|AEE31314.1| K+ uptake permease 10 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 1.079e-43
Complete
sp_v3.0_unigene6253 SustainPine v3.0 2972
AutoFact: potassium transporter 1 [Arabidopsis thaliana] sp|O22397.2|POT1_ARATH RecName: Full=Potassium transporter 1; Short=AtKT1; Short=AtKUP1; Short=AtPOT1 gb|AAB87687.1| potassium transporter [Arabidopsis thaliana] gb|AAB88901.1| high-affinity potassium transpo 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 5.46506e-44
Complete
sp_v3.0_unigene6367 SustainPine v3.0 2712
AutoFact: ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana] sp|Q38953.2|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis th 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.56e-40
N-terminus
sp_v3.0_unigene6870 SustainPine v3.0 1068
AutoFact: Putative DNA-binding protein n=2 Tax=Arabidopsis thaliana RepID=O81047_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein smubp-2, putative 5.596e-09
C-terminus
sp_v3.0_unigene7031 SustainPine v3.0 1661
AutoFact: high-affinity K+ transporter [Capsicum annuum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 5.04467e-44
Putative Complete
sp_v3.0_unigene7652 SustainPine v3.0 1926
AutoFact: Potassium transporter 5 [Arabidopsis thaliana] sp|Q9M7K4.1|POT5_ARATH RecName: Full=Potassium transporter 5; Short=AtHAK1; Short=AtHAK5; Short=AtPOT5 gb|AAF36490.1|AF129478_1 K+ transporter HAK5 [Arabidopsis thaliana] gb|AAQ89611.1| At4g13420 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 0.0
Putative Complete
sp_v3.0_unigene8907 SustainPine v3.0 312
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] gb|AAK76494.1| putative helicase [Arabidopsis thaliana] gb|AAM15033.1| putative helicase [Arabidopsis thaliana] gb|AAD17447.2| putative helicase [Arabidopsis thaliana] gb|AAM14300.1| putative helicase [A 9.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene9288 SustainPine v3.0 1973
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 8.102e-14
N-terminus
sp_v3.0_unigene10262 SustainPine v3.0 2801
AutoFact: Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9S4D1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Potassium transporter, putative 3.78351e-44
Complete
sp_v3.0_unigene10976 SustainPine v3.0 2402
AutoFact: R3h domain containing protein, putative n=1 Tax=Ricinus communis RepID=B9SG72_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: R3h domain containing protein, putative 7.973e-15
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain