Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6783 SustainPine v3.0 1187
• AutoFact: small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis thaliana] gb|AAG51392.1|AC011560_24 hypothetical protein; 114721-113936 [Arabidopsis thaliana] gb|AAV31168.1| At3g10400 [Arabidopsis thaliana] gb|AAX49371.1| At3g10400 [Arabidopsis thaliana] gb|A 0.0
• FL-Next: sp=Serine/arginine-rich splicing factor RSZ23; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA binding protein 2.383e-06
Complete
sp_v3.0_unigene6993 SustainPine v3.0 2204
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7198 SustainPine v3.0 2039
• AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
• FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene7222 SustainPine v3.0 1445
• AutoFact: Os02g0252100 protein n=7 Tax=Oryza sativa RepID=Q6K542_ORYSJ 9.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7248 SustainPine v3.0 1513
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene7292 SustainPine v3.0 2479
• AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly(A)-binding protein 6.848e-34
Complete
sp_v3.0_unigene7364 SustainPine v3.0 1436
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SQT1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene7375 SustainPine v3.0 1965
• AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein AT4g12640 5.848e-06
C-terminus
sp_v3.0_unigene7469 SustainPine v3.0 1823
• AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 6.759e-23
Complete
sp_v3.0_unigene7631 SustainPine v3.0 1779
• AutoFact: putative GTP-binding protein [Arabidopsis thaliana] emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gb|AED91684.1| puta 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein engB, putative 2.668e-08
Complete
sp_v3.0_unigene7639 SustainPine v3.0 1896
• AutoFact: Os08g0486200 protein n=3 Tax=Oryza sativa RepID=Q6ZDR7_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7675 SustainPine v3.0 1968
• AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7679 SustainPine v3.0 1881
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CID11 3.492e-16
Complete
sp_v3.0_unigene7704 SustainPine v3.0 2056
• AutoFact: RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-directed RNA polymerase 3.154e-20
C-terminus
sp_v3.0_unigene7744 SustainPine v3.0 1232
• AutoFact: Peroxidase 10, putative n=1 Tax=Ricinus communis RepID=B9S775_RICCO 0.0
• FL-Next: tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peroxidase 2.007e-31
Putative Complete
sp_v3.0_unigene7795 SustainPine v3.0 1711
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RNK5_RICCO 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7801 SustainPine v3.0 1933
• AutoFact: FCA gamma [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative ribonucleoprotein 4.613e-11
Putative Complete
sp_v3.0_unigene7825 SustainPine v3.0 1840
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: FERONIA receptor-like kinase 1.181e-17
Putative Complete
sp_v3.0_unigene7909 SustainPine v3.0 1814
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SHJ5_RICCO 0.0
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Chromosome chr5 scaffold_98, whole genome shotgun sequence 2.308e-06
Complete
sp_v3.0_unigene7970 SustainPine v3.0 1515
• AutoFact: putative splicing factor U2AF large chain [Arabidopsis thaliana] 2.0e-25
• FL-Next: sp=Splicing factor U2af large subunit A; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain