Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene190854 SustainPine v3.0 393
AutoFact: Splicing factor U2af 38 kDa subunit n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UL33_9EUKA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.461e-11
Internal
sp_v3.0_unigene191273 SustainPine v3.0 272
AutoFact: PREDICTED: similar to U1 small nuclear ribonucleoprotein A [Nasonia vitripennis] 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene191815 SustainPine v3.0 559
AutoFact: Putative rrm-type rna binding protein n=2 Tax=Metarhizium RepID=E9ECY5_METAQ 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenylate-binding protein 2 2.539e-15
C-terminus
sp_v3.0_unigene192280 SustainPine v3.0 513
AutoFact: DUF1777 multi-domain protein 3.0e-19
coding
sp_v3.0_unigene193073 SustainPine v3.0 351
AutoFact: PREDICTED: probable RNA-binding protein 19 [Macaca mulatta] 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene193124 SustainPine v3.0 443
AutoFact: glycine-rich RNA binding protein, putative [Arabidopsis thaliana] 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 7 4.271e-07
C-terminus
sp_v3.0_unigene193502 SustainPine v3.0 445
AutoFact: TT_ORF1 multi-domain protein 1.0e-06
coding
sp_v3.0_unigene195741 SustainPine v3.0 257
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene196021 SustainPine v3.0 204
AutoFact: putative amino acid or GABA permease [Arabidopsis thaliana] 2.0e-24
FL-Next: sp=Amino-acid permease BAT1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative GABA-specific permease 3.714e-16
Internal
sp_v3.0_unigene196315 SustainPine v3.0 200
AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 5.0e-24
FL-Next: sp=Phytochrome A-associated F-box protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene196448 SustainPine v3.0 410
AutoFact: DUF1421 multi-domain protein 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene196777 SustainPine v3.0 298
AutoFact: Malectin/receptor-like protein kinase [Arabidopsis thaliana] sp|Q9SJT0.1|Y2214_ARATH RecName: Full=Probable receptor-like protein kinase At2g21480; Flags: Precursor gb|AAD23692.1| putative protein kinase [Arabidopsis thaliana] gb|AEC07184.1| Malectin/rece 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pto-like serine/threonine kinase 5.232e-15
Internal
sp_v3.0_unigene197012 SustainPine v3.0 218
AutoFact: Putative receptor protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=Q8S3P8_ORYSJ 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.084e-12
Internal
sp_v3.0_unigene197061 SustainPine v3.0 301
AutoFact: Nramp transporter n=1 Tax=Populus trichocarpa RepID=B9N9Y7_POPTR 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Metal transporter, putative 6.75e-13
Internal
sp_v3.0_unigene197949 SustainPine v3.0 195
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative uncharacterized protein At2g27790 3.52e-10
N-terminus
sp_v3.0_unigene198610 SustainPine v3.0 372
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
N-terminus
sp_v3.0_unigene198904 SustainPine v3.0 469
AutoFact: Unassigned protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene199877 SustainPine v3.0 815
AutoFact: PREDICTED: alternative splicing factor SRp20/9G8, putative-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBF9B 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene200368 SustainPine v3.0 438
AutoFact: Spliceosome associated protein, putative n=1 Tax=Ricinus communis RepID=B9RRM5_RICCO 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative spliceosome associated protein 1.147e-08
Putative N-terminus
sp_v3.0_unigene200607 SustainPine v3.0 142
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain