Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene184309 SustainPine v3.0 772
• AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 5.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 3.873e-12
Internal
sp_v3.0_unigene184508 SustainPine v3.0 507
• AutoFact: PREDICTED: cap binding protein 20-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB931 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear cap-binding protein 4.622e-11
N-terminus
sp_v3.0_unigene184646 SustainPine v3.0 473
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CID11 2.932e-16
Internal
sp_v3.0_unigene184878 SustainPine v3.0 345
• AutoFact: putative polypyrimidine track-binding protein [Oryza sativa Japonica Group] 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polypyrimidine track-binding protein 8.285e-06
C-terminus
sp_v3.0_unigene185754 SustainPine v3.0 394
• AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 8.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding region-containing protein, putative 9.224e-20
N-terminus
sp_v3.0_unigene185800 SustainPine v3.0 393
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM40_MARPO 8.0e-30
• FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 5.53513e-42
Internal
sp_v3.0_unigene186138 SustainPine v3.0 420
• AutoFact: DUF1777 multi-domain protein 3.0e-10
coding
sp_v3.0_unigene186176 SustainPine v3.0 883
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 2.0e-23
• FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 1.259e-15
Complete
sp_v3.0_unigene186617 SustainPine v3.0 413
• AutoFact: RNA-binding protein 8A [Danio rerio] sp|Q5D018.1|RBM8A_DANRE RecName: Full=RNA-binding protein 8A; AltName: Full=RNA-binding motif protein 8A; AltName: Full=Ribonucleoprotein RBM8A gb|AAH90261.1| Zgc:110525 [Danio rerio] 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding protein 8A 1.207e-07
C-terminus
sp_v3.0_unigene188224 SustainPine v3.0 368
• AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene189124 SustainPine v3.0 802
• AutoFact: peroxidase 56 [Arabidopsis thaliana] sp|Q9LXG3.1|PER56_ARATH RecName: Full=Peroxidase 56; Short=Atperox P56; AltName: Full=ATP33; Flags: Precursor emb|CAB89328.1| prx10 peroxidase-like protein [Arabidopsis thaliana] gb|AAL59994.1| putative prx10 peroxidas 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peroxidase 1.846e-25
C-terminus
sp_v3.0_unigene189216 SustainPine v3.0 1311
• AutoFact: plastidic phosphate translocator-like protein1 [Mesembryanthemum crystallinum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plastidic phosphate translocator-like protein1 1.781e-10
Putative Complete
sp_v3.0_unigene189283 SustainPine v3.0 621
• AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 4.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene189340 SustainPine v3.0 404
• AutoFact: Jun multi-domain protein 1.0e-05
coding
sp_v3.0_unigene189926 SustainPine v3.0 177
• AutoFact: Gly_rich multi-domain protein 1.0e-09
unknown
sp_v3.0_unigene190190 SustainPine v3.0 397
• AutoFact: GRP multi-domain protein 2.0e-11
• Sma3: Putative glycine rich protein 6.261e-22
coding
sp_v3.0_unigene190453 SustainPine v3.0 360
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SBS3_PHYPA 7.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
N-terminus
sp_v3.0_unigene190483 SustainPine v3.0 473
• AutoFact: Cold shock protein n=1 Tax=Bermanella marisrubri RepID=Q1N1Z0_9GAMM 7.0e-18
• FL-Next: tr=Cold shock domain containing proteins, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Glycine-rich protein 2b 2.893e-08
Complete
sp_v3.0_unigene190499 SustainPine v3.0 426
• AutoFact: KRTAP multi-domain protein 2.0e-09
coding
sp_v3.0_unigene190804 SustainPine v3.0 496
• AutoFact: RNase P protein subunit [Dictyostelium discoideum AX4] gb|EAL66686.1| RNase P protein subunit [Dictyostelium discoideum AX4] 0.0001
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Os08g0192900 protein 8.285e-06
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain