Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene166753 SustainPine v3.0 128
AutoFact: Splicing factor U2AF 26 kDa subunit n=2 Tax=Agaricales RepID=A8N5I3_COPC7 6.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.196e-11
N-terminus
sp_v3.0_unigene166760 SustainPine v3.0 263
AutoFact: RNA-binding protein [Brassica juncea] 7.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C 1.777e-09
Internal
sp_v3.0_unigene167028 SustainPine v3.0 232
AutoFact: putative strictosidine synthase [Oryza sativa Japonica Group] gb|ABF98899.1| Strictosidine synthase family protein, expressed [Oryza sativa Japonica Group] gb|EAY91875.1| hypothetical protein OsI_13523 [Oryza sativa Indica Group] 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative strictosidine synthase 5.639e-16
Internal
sp_v3.0_unigene167062 SustainPine v3.0 285
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene167117 SustainPine v3.0 290
AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 5.0e-26
FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase, putative 6.56e-17
Internal
sp_v3.0_unigene167129 SustainPine v3.0 256
AutoFact: Chaperone protein dnaJ, putative n=2 Tax=fabids RepID=B9RQ46_RICCO 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DnaJ-like protein 1.034e-13
Putative N-terminus
sp_v3.0_unigene167195 SustainPine v3.0 293
AutoFact: zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46; Short=AtC3H4 7.0e-18
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene167492 SustainPine v3.0 361
AutoFact: splicing factor [Arabidopsis thaliana] 4.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene167669 SustainPine v3.0 175
AutoFact: putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana] sp|Q9SKJ7.1|PT225_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At2g25520 gb|AAD20711.1| putative phosphate/phosphoenolpyruvate translocator protein [ 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastidic phosphate translocator-like protein1 1.451e-11
Putative N-terminus
sp_v3.0_unigene167678 SustainPine v3.0 160
unknown
sp_v3.0_unigene167701 SustainPine v3.0 241
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene167954 SustainPine v3.0 220
AutoFact: receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] dbj|BAD25902.1| receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] 7.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_302, whole genome shotgun sequence 6.089e-08
Internal
sp_v3.0_unigene167988 SustainPine v3.0 253
AutoFact: receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] dbj|BAD25902.1| receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 1.366e-14
Internal
sp_v3.0_unigene168073 SustainPine v3.0 222
AutoFact: Unassigned protein 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene168338 SustainPine v3.0 236
AutoFact: RNA recognition motif-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IJ76_ARATH 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor RSP41 1.648e-16
Internal
sp_v3.0_unigene168693 SustainPine v3.0 335
AutoFact: FAP multi-domain protein 2.0e-16
Sma3: Glycine-rich protein 2.012e-11
coding
sp_v3.0_unigene169019 SustainPine v3.0 271
AutoFact: Gly_rich multi-domain protein 7.0e-17
Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
AutoFact: GRP multi-domain protein 3.0e-16
Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene170036 SustainPine v3.0 237
AutoFact: GRP multi-domain protein 1.0e-10
Sma3: Putative glycine-rich protein 2.016e-08
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain